Basic Information

Insect: Chesias legatella
Gene Symbol: -
Assembly: GCA_947359385.1
Location: OX375792.1:1110011-1113616[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.4e-07 2.5e-05 24.5 3.4 1 23 195 217 195 217 0.98

2 15 7.6e-06 0.00043 20.6 2.3 1 23 231 253 231 253 0.98

3 15 0.00012 0.0065 16.9 1.0 1 23 259 281 259 281 0.97

4 15 4.7e-05 0.0026 18.1 1.3 2 23 288 309 287 309 0.91

5 15 1.5e-06 8.6e-05 22.8 2.9 1 23 315 338 315 338 0.97

6 15 2e-06 0.00012 22.4 1.5 1 23 344 366 344 366 0.98

7 15 2.1e-05 0.0012 19.2 2.9 3 23 374 394 372 394 0.98

8 15 0.00014 0.0078 16.7 1.9 1 23 400 422 400 422 0.96

9 15 0.00014 0.0077 16.7 3.9 1 23 428 450 428 450 0.98

10 15 2.4e-07 1.4e-05 25.3 1.7 2 23 457 478 456 478 0.97

11 15 8.8e-06 0.0005 20.4 0.9 1 23 484 506 484 506 0.98

12 15 1.2e-05 0.00068 20.0 2.2 2 23 513 534 512 534 0.97

13 15 1.7e-05 0.00099 19.5 0.7 3 23 542 562 540 562 0.97

14 15 0.00094 0.053 14.0 7.2 1 23 573 595 573 595 0.98

15 15 7.5e-06 0.00043 20.6 2.8 1 23 601 623 601 623 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.4e-07	2.5e-05	24.5	3.4	1	23	195	217	195	217	0.98
2	15	7.6e-06	0.00043	20.6	2.3	1	23	231	253	231	253	0.98
3	15	0.00012	0.0065	16.9	1.0	1	23	259	281	259	281	0.97
4	15	4.7e-05	0.0026	18.1	1.3	2	23	288	309	287	309	0.91
5	15	1.5e-06	8.6e-05	22.8	2.9	1	23	315	338	315	338	0.97
6	15	2e-06	0.00012	22.4	1.5	1	23	344	366	344	366	0.98
7	15	2.1e-05	0.0012	19.2	2.9	3	23	374	394	372	394	0.98
8	15	0.00014	0.0078	16.7	1.9	1	23	400	422	400	422	0.96
9	15	0.00014	0.0077	16.7	3.9	1	23	428	450	428	450	0.98
10	15	2.4e-07	1.4e-05	25.3	1.7	2	23	457	478	456	478	0.97
11	15	8.8e-06	0.0005	20.4	0.9	1	23	484	506	484	506	0.98
12	15	1.2e-05	0.00068	20.0	2.2	2	23	513	534	512	534	0.97
13	15	1.7e-05	0.00099	19.5	0.7	3	23	542	562	540	562	0.97
14	15	0.00094	0.053	14.0	7.2	1	23	573	595	573	595	0.98
15	15	7.5e-06	0.00043	20.6	2.8	1	23	601	623	601	623	0.98

Sequence Information

Coding Sequence: ATGTCTCAAATATGCCGGGTCTGTCTCTGCGGCGAAGTGCGGATGTACACTATAGGACAAAGACATCTTGTAGAATTATACGAGAAACTAGCCAGCACAAAGCTAAATATTGAGAATCTACAGCTAAACACAATGTGCTACATATGTTACTCTCAACTGCAGAGGTGCTATAGGTTCTCCGACATGGCTCACACATCTGAGAAAATACTGACAGATCTATACCTGGATGGTGTTGAGGTAACGCATAAGACTGTCACAAAACTAAACATAGGCACAATTCAAAACCTATCAACGACCACCACCCATTCCATTTCCATAGATTTATCGGGTGAGAGTATAAATGCTTGGAATCTGCCTACCCCTACGGGAAACAGGCACGAGTTTTACCATGTCTACAATGAACAGACCGTAAAAGAGGAAGAGTGTCTTAAGGAAGAGAATTTCAAGCATGAAACGGCTGAAGACGATGACTTAATCGATTTGAACGGAATTGAAATTTGCGATACGTTCACTGATGTGAAATTTACAACTGAAGATCAGACTGACCAATCAGTTAACGTAGAAACAGAATTGGACACAAATTTCTATTGTCACATTTGTAATAAAAAATTTGCCACTAAATCCAACGTAGACAGACACATGAGAATTCACACCGGAGAAAACACATCCAACCGAATGAAGGAGAAACAGTACGCATGCGACAAATGCGACACAAGATTCCACGAAAAGGGTAATCTGAAGACTCACATGAGAATTCACGATGGAGAAAAGCCATTCGCTTGTGATCTGTGCGGTAAAACGTTCCTGCTTAAGACAAATTTGAAACGACACTATCAGATACACACCGGGGAAAAGCCATATGCTTGCATCCGGTGTGGCACTACCTTTGCCCACAAGTTCAGTCTCCAAGCCCATATGAGGATTCACACCGGGGAACGTCCGTACTCATGTAAAGAGTGCAAAAAGTGTTTCACCGAAGCGGGCACTTTGAAAAGACATATAAGGAACGTTCACACGATTGAAAAGCCATATTCCTGTGAGGTTTGCACGAAGACTTTCAAATTAAACTATCAATTGAAACAACATATGTTGGTTCACACTGGTGAAAAGCGATATGGATGCGACAAATGCCACAAGAGATTTACCCAGAAGGTGTATTTGACCGAACATTACAGAATACACACCGGAGAAAAGTCATTTATATGTGATATATGTGGTAAAGGATTTTCACACTATACCACTATGATGAAGCATGTACAGTTTCACACaacagGTAAAACATACGCGTGCGACCAGTGCAACAAATACTTTAGACTGAAATGTGGACTGAGAATGCACATGAGAACACACACGGGTGAGAAGCCGTGTACATGTCACCTGTGCGGAAAGGCATTCATCCAGCCGGGCGGTCTCAAGATACACATGAGAACACACACCGGTGAGAGGCCGTATCAGTGTGACAAATGTGACAAAGCGTTCAGTCAGAGGGGACGTCTCACAGAACACAGCAAGATACACAGCGGTGAGAAGTCATGTGTGTGCAACGAGTGTGGCAAAGCGTTCCTGCAGAAGAGCGGTTTGTACAAACATCAGAGGACCCACACGGGGGTTAGACCGTACGGTTGTGATCGTTGTGAGAAAACCTTTACTGGTAAGTGGGGGTTGACTAAACACATGCAGACTCATCTGGACGGGGGGAGCACCCCGGAGAGGCTGTTCCACTGTCCCCGGTGCAGCAAGACCTTCAAGAAGAGCTGCCAGCTGATCAGCCACAAGCGGGTTCACACCGGAGACCAGCCATTCCCATGTGATACCTGTTCCAAGCGGTTTATGACCAGCGGTCACCTGAGGAGACACCTCAAGATTCACAGCAAGGAGTCTCATTGA
Protein Sequence: MSQICRVCLCGEVRMYTIGQRHLVELYEKLASTKLNIENLQLNTMCYICYSQLQRCYRFSDMAHTSEKILTDLYLDGVEVTHKTVTKLNIGTIQNLSTTTTHSISIDLSGESINAWNLPTPTGNRHEFYHVYNEQTVKEEECLKEENFKHETAEDDDLIDLNGIEICDTFTDVKFTTEDQTDQSVNVETELDTNFYCHICNKKFATKSNVDRHMRIHTGENTSNRMKEKQYACDKCDTRFHEKGNLKTHMRIHDGEKPFACDLCGKTFLLKTNLKRHYQIHTGEKPYACIRCGTTFAHKFSLQAHMRIHTGERPYSCKECKKCFTEAGTLKRHIRNVHTIEKPYSCEVCTKTFKLNYQLKQHMLVHTGEKRYGCDKCHKRFTQKVYLTEHYRIHTGEKSFICDICGKGFSHYTTMMKHVQFHTTGKTYACDQCNKYFRLKCGLRMHMRTHTGEKPCTCHLCGKAFIQPGGLKIHMRTHTGERPYQCDKCDKAFSQRGRLTEHSKIHSGEKSCVCNECGKAFLQKSGLYKHQRTHTGVRPYGCDRCEKTFTGKWGLTKHMQTHLDGGSTPERLFHCPRCSKTFKKSCQLISHKRVHTGDQPFPCDTCSKRFMTSGHLRRHLKIHSKESH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -