Cleg017459.1
Basic Information
- Insect
- Chesias legatella
- Gene Symbol
- -
- Assembly
- GCA_947359385.1
- Location
- OX375781.1:7118126-7119441[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-07 0.0001 22.0 0.0 1 40 12 51 12 56 0.89 2 2 9.3 9e+03 -3.5 0.0 11 23 322 333 321 336 0.67
Sequence Information
- Coding Sequence
- atgccaccgacaaaaggaaattttagaaattatacacaagaggctatggaagcggctgtagaagatgtgcgtttacacaaaactccttataataccgctgcaaaaaaatttaacgtaccaaggattactttgaagtacaaggtggaaggaaaacatccgatGGACCGAAAAATGGGTCCACCGGCCATATTGAGTAAAACGGAGGAAAAAACTATCACAGATTGGATATTTGAAATGGCTCGTGCAGGATTTCCCGTCACTATGAAGGAGGTAGTCTTTAGTGTACAGCGTCTGTTAAAAGAATTAAAAAGACCAAACCCATTTAAAGATAACTGCCCAGGAAAATCGTGGATGAAAGGATTCATGAAAAGGAATCCTGGAATATCCGTTCGCATGTCCCAAAACCTTACCAGATCAAGAGCTGTTTTATCCAAGGAGCAAATTTTAAATTGGTTTAAAGAGGTAGAGATATTCTTAGATGAAACTCAACAAAAAGACATCTTACAAGATCCCAGAAGGATCTTTAACACAGATGAAACAGCTTTTTTCTTAAATCCGAAGGGTGGTAAGGTTTTAGCAAAAAAAGGGGACAAGACAGTATATCAGCAAGTAAATCCAGATGAGAAGGAAAGCCTAACCGTCCTTGTCACAAGCAGTGCATCTGGTGCTGTACCTCCTCCAACAGTTTTGTTTAAGTACAAAAGAATTCCTCAGGAAATTGCACAGAATTTCCCTCCGGAATCTGGGTTCCGCAAGCCGGGGAACCCCGGTTCTGCAAGCAATTACGAATGTAAAGACCCCATGGAAGTTAAGATTCTGTACGCAAAGATGGCTCAGGCGAATATGACCGGAATGCTTACCGAGTCAGCCTTCCAAATAAGAAGTAAACAGGTATTCGCTGGGAAGAGGGTGGTAAACTATATAGATGCCTTCTACAAGCACATGTCTGCAGATGCCCCTCAGTCCATTCAAGGCGGGATGACTCTACATGGTCTAGCGGCGTTCTATAGAAGTTTAAAAGTGGAGCTGATGACAAAGAAAGAAGACAACCCCATCCATGGCACTGTTGAATGGAGGGAGATGGCTGGGTTAACAATCGACAATCATTGTGCCATCTCACCAGTTGTTGTTAGGGAAAGTGGCAGATATTTCTGTGGGCGATCTTAA
- Protein Sequence
- MPPTKGNFRNYTQEAMEAAVEDVRLHKTPYNTAAKKFNVPRITLKYKVEGKHPMDRKMGPPAILSKTEEKTITDWIFEMARAGFPVTMKEVVFSVQRLLKELKRPNPFKDNCPGKSWMKGFMKRNPGISVRMSQNLTRSRAVLSKEQILNWFKEVEIFLDETQQKDILQDPRRIFNTDETAFFLNPKGGKVLAKKGDKTVYQQVNPDEKESLTVLVTSSASGAVPPPTVLFKYKRIPQEIAQNFPPESGFRKPGNPGSASNYECKDPMEVKILYAKMAQANMTGMLTESAFQIRSKQVFAGKRVVNYIDAFYKHMSADAPQSIQGGMTLHGLAAFYRSLKVELMTKKEDNPIHGTVEWREMAGLTIDNHCAISPVVVRESGRYFCGRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -