Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.053 51 3.7 0.1 21 37 15 32 12 40 0.73

2 7 0.059 58 3.6 0.1 21 37 28 45 25 52 0.74

3 7 0.018 18 5.2 0.1 21 37 54 71 51 79 0.79

4 7 0.018 18 5.2 0.1 21 37 80 97 77 105 0.79

5 7 0.26 2.5e+02 1.5 0.1 21 31 106 116 102 121 0.85

6 7 0.079 77 3.2 0.1 21 31 119 129 116 134 0.85

7 7 0.36 3.5e+02 1.1 0.0 21 30 132 141 131 142 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.053	51	3.7	0.1	21	37	15	32	12	40	0.73
2	7	0.059	58	3.6	0.1	21	37	28	45	25	52	0.74
3	7	0.018	18	5.2	0.1	21	37	54	71	51	79	0.79
4	7	0.018	18	5.2	0.1	21	37	80	97	77	105	0.79
5	7	0.26	2.5e+02	1.5	0.1	21	31	106	116	102	121	0.85
6	7	0.079	77	3.2	0.1	21	31	119	129	116	134	0.85
7	7	0.36	3.5e+02	1.1	0.0	21	30	132	141	131	142	0.88

Coding Sequence: ATGATAATTGGAGCAAACACTGAGATTGCAGCGAGTAAACTGCGCGCCTCACACTTGTTCGGTATTGCAGCGAGTAAACTGCGCGCCTCACACTTGTTCGGTATTGCAGCGAGTAAACTGCGCGCCTCACACTTGTTCGGTATTGCAGCGAGTAAACTGCGCGCCTCACAATTATTCGGTATTGCAGCGAGTAAACTGCGCGCCTCACACTTGTTCGGTATTGCAGCGAGTAAACTGCGCGCCTCTCAATTATTCGGTATTGCAGCGAGTAAACTGCGCGCCTCACACTTGTTCGGTATTGCAGCGAGTAAACTGCGCGCCTCACACTTGTTCGGTATTGCAGCGAGTAAACTGCGCGCCTCACAATTATTCGGTATTGCAGCGAGTAAACTGCGCGCCTCACAATTATTCGGTATTGCAGCGAATATGTGTGAGCTGTTGCCACCGGCCGAGTGGGTAGCGCTCGTGCCCGGTGCCCGGTGCCCCGTGCCCGGTGCCCGGTGCCCGGTGCCCGGTGCCCCGTGCCCCGGGAGGTGGGGTGAGGCGCGCGTGGATAATGCAAGATGTACTGTGAGGATAGACGTGTAG
Protein Sequence: MIIGANTEIAASKLRASHLFGIAASKLRASHLFGIAASKLRASHLFGIAASKLRASQLFGIAASKLRASHLFGIAASKLRASQLFGIAASKLRASHLFGIAASKLRASHLFGIAASKLRASQLFGIAASKLRASQLFGIAANMCELLPPAEWVALVPGARCPVPGARCPVPGAPCPGRWGEARVDNARCTVRIDV

Sequence clustering based on sequence similarity using MMseqs2