Basic Information

Insect: Chesias legatella
Gene Symbol: -
Assembly: GCA_947359385.1
Location: OX375766.1:4534616-4537360[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4.3e-08 4.1e-05 23.2 0.0 3 42 17 57 15 60 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4.3e-08	4.1e-05	23.2	0.0	3	42	17	57	15	60	0.87

Sequence Information

Coding Sequence: ATGCCCAGAAACTATGTAAAAAAGAAGGAACCGCCCCGGTATACTGTAGAAGATATTAGAAGAGCAGTGGAAGACGTCACAGAAAAACGGAAGACATTTAGACAAGCTAGCGAATACTATGGAATACCTACTGCTGTTATTTATCACCGTATTAAAGGCCGAAAAGTGTCTCTAGACAGAATGGGTGGCGGGGTCTCCAAAGCATTACCGGATCATGTGGAACAACATCTCGTTAATTGCCTGAAAACAAGAGCGAGAATGAATCACCCGTGCCATAAAGAAGAATTTTTGATGTTGGTAGGAGAATATGTGAAAGCACATAAAATAAAAACGCCCTTTAAAGATAACATTCCTGGAGACTGTTGGTACCAATCCTTCATGAAAAGAAACCCTAGTCTTTCACTAAAAAAGCCTGAAATTTTACAAAAGGCCCGCACTGATGCAAGGAGACCTCACGTTGTTTACGATTTTTACGATATGTTATCAAAAGAAATAACCGAAAACAATCTCAAAGACAAGCCAAGGTACATTTTTAACGCCGATGAGAGTGGTTTTCATAGCGATCCCAGCAAACTTCGAGCAATAGGGGAAAAAGGAACAGCTCTCTCCCGCGTAACTGGCGGCTCAGGTCGAGAATCGACTAGCGTCTTAGCATGTGTAGCTGCAGATGGTACATTTTTGCCCCCTTGTATAGTATTTAAAGGAGTTGCTGTACAGGCAAGATGGGTTTCTGATAAGGCTTATCCTGGAACTTTATTCGGAGCAACGAAAAACGGCTGGATGGAGGAACCTACTTTCCACAATTGGCTCATAAACGGATTTATACCTTATGTAGATAACATCCGGAAAATAAATAACGAACCCAATCATAAGGTAATTCTGATTTATGACGGTCATTCTAGCCACATTAGCGTGAGAATCGTAGAAGATGCTATAAATGCAAATATAATTTTAGTCAAGTTTCCCAGCCATTTGACAGACCGCATCCAGCCTCTGGACAAATGTGTATTTGGACCAGTGAAACGTCATTGGGAAAAAACATTAGTAGAACATGGCATAAAACAAATGGGAAAAGGTACTGGCCATCTATCCAAAGAAAAATTCACAGAACTCCTAGGGGAGGTATGGGCACAGGCCTTTACAACCAAGAACATTGTGTCTGGATTCAACACAACAGGTATTTTTCCAGTAGATGCTACAAAATTCTCCAAAAAAATATTCAATCCTATCGAACTACAAATATACCACAACCTGATAAATGCACTAAACGAAAAAGAGACAGATTTTGATGCCAATTGTGACAATAGTATGTCTACAGAAGAATCGCCAAATTTTCCAGGTGAATTTGTTCCAACATATAATGGTTCTACATCAACAGTATGCACTGACCAAAGAGACGAACCTGCACCAGAGGATATTATACTTACTTCAGACTTAGAAAATGCTATCGATAATAATTCTTCAACAAAGGGTTGTATTGAGGAACATGCTAATCTTGTTTGCTCTGGTTTTGAAATCTGTTCTACTAGTAATACAATCAACATGGCAAGAACAACTAGTATTCCACATTGCTCAAATTTTGATGAACACACATTGACTGTTCAAGATAATGTCATTCCTAGTTGCTCGGTCTTTCAACAGCCCACCACAAGTATTCATGCTGACGTTCGCTGTGAACAACCTTTGAAGGATATAACTGGTGAATCAGCAATACCGGATTGTAGTACCTTTGAAGGCCATGCTATGAATGATTCCGTCGTATTAACCAACAATGAAAATTCATCTCCATTGGTAAATAAAATATTAAAATTGATATCATTGGATACAACCGCAAATGACGCTATTAAAGCAAAAATTCTAAAAGCTATATCATCAACTAATGGTGATGATGACAAGGCTGATGATATTATGTCGCCAAATAAAGAAACTCTAGAGAAGTTGTTTAAATTACATAAAAATAGTCCTGAAAAGAAAAGGAAAATAGTAGTACCAAGGCTAAAGGTAGCAACATATGGAGAAGTTCTTACTACAGACGCCGTTAAAGAAAGATTGAAACAGGCGGAGGAAGCTAAGAATGGTAAAGGACTTAAGAAAAGAGTAAAGACAGAAAAGAACCCAAAGAATAAGAGTCAAGGAAAACACACAAAAAGTAAGAACTTAAATAAAAAAGACGACAAGGAGAATAGTGATAGTAAGAAAGCCAAGTTTGACGAATCTAACAGTAATCAGAAAGAAAAAGTTGAAAAAACTAGTAAGGAACTAGATAAGCCAATTCCACTTGTCAATGTGCGCCAAAGAAATAAAGTATACGACAGTGACATAGAAGAGTCTGAGGAAGAAGAAATAACAGTGCCATATGCAGAAAGTGAAGACAGTGATTACAACGCTGCATGCGAAACTGTAACTGAGGACTGTGAATTTCTTGAGACGACATCAGTTACTGACAAATTAACAAAAGGAAATTTTGTTTTGGTAATGTTTAAGGGAGGAAAAAGACTAACTATTACCTTTCGCTACTTGTGTATGGTAGATAGCATTGACGAAGAGGACTCAAGCGAAATACTAGTAACGTCTTTAAAAAGTATCGATTCATCTAAGCAAGTCTTTGCCCTCAACGAAAACGATATGAGTTCAGTGTCCATTAAAGACGTTATTGGTGTCTTACCAGAACCTATCTTATCTCTTAAAGGGGAAAGAATATTTTACAAATTCCCAAAACCTTTAGACATTTCTGAAAAAATGTGA
Protein Sequence: MPRNYVKKKEPPRYTVEDIRRAVEDVTEKRKTFRQASEYYGIPTAVIYHRIKGRKVSLDRMGGGVSKALPDHVEQHLVNCLKTRARMNHPCHKEEFLMLVGEYVKAHKIKTPFKDNIPGDCWYQSFMKRNPSLSLKKPEILQKARTDARRPHVVYDFYDMLSKEITENNLKDKPRYIFNADESGFHSDPSKLRAIGEKGTALSRVTGGSGRESTSVLACVAADGTFLPPCIVFKGVAVQARWVSDKAYPGTLFGATKNGWMEEPTFHNWLINGFIPYVDNIRKINNEPNHKVILIYDGHSSHISVRIVEDAINANIILVKFPSHLTDRIQPLDKCVFGPVKRHWEKTLVEHGIKQMGKGTGHLSKEKFTELLGEVWAQAFTTKNIVSGFNTTGIFPVDATKFSKKIFNPIELQIYHNLINALNEKETDFDANCDNSMSTEESPNFPGEFVPTYNGSTSTVCTDQRDEPAPEDIILTSDLENAIDNNSSTKGCIEEHANLVCSGFEICSTSNTINMARTTSIPHCSNFDEHTLTVQDNVIPSCSVFQQPTTSIHADVRCEQPLKDITGESAIPDCSTFEGHAMNDSVVLTNNENSSPLVNKILKLISLDTTANDAIKAKILKAISSTNGDDDKADDIMSPNKETLEKLFKLHKNSPEKKRKIVVPRLKVATYGEVLTTDAVKERLKQAEEAKNGKGLKKRVKTEKNPKNKSQGKHTKSKNLNKKDDKENSDSKKAKFDESNSNQKEKVEKTSKELDKPIPLVNVRQRNKVYDSDIEESEEEEITVPYAESEDSDYNAACETVTEDCEFLETTSVTDKLTKGNFVLVMFKGGKRLTITFRYLCMVDSIDEEDSSEILVTSLKSIDSSKQVFALNENDMSSVSIKDVIGVLPEPILSLKGERIFYKFPKPLDISEKM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01416727;
90% Identity: iTF_00686282;
80% Identity: -