Cleg012876.1
Basic Information
- Insect
- Chesias legatella
- Gene Symbol
- -
- Assembly
- GCA_947359385.1
- Location
- OX375767.1:498130-507824[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-11 1.5e-08 34.2 0.0 4 39 236 272 233 276 0.90 2 4 7e-11 6.8e-08 32.1 0.3 2 39 288 325 287 328 0.91 3 4 8.6e-16 8.3e-13 47.9 0.1 2 45 343 387 342 387 0.96 4 4 8.8e-17 8.6e-14 51.0 0.1 2 43 395 437 394 439 0.94
Sequence Information
- Coding Sequence
- ATGCCTGGCTCCGGAAAATTTGCTGTGAAATGTGAGCCTCCATCTGATGAAGAAGACAATAGCCCTCAGTTGGCCGACATCTTTGTCAATAGCGCGATTCCCTCGGAATTCCATTCGCTTACTTCAATAAAAGTAGAAGTCGGATGCCATGATGATGAACGTATTCCGGTGCTGTTACATCACCTTCAGGTCCGTATGCAGTCATTGACGGCTATGTTTATAGTGCCTTCAGCAGGTAGCACGTGCCTGCTAGACCCAGGTTCGATTCCTAATGCCGATATTTGTGCCGACAGAATAAGTGCCGAGGGGCTGGAGGAGCTGGCCCCACTGACGCCGGCGGGGCCCGCAGCGACCCCTGTGTGCGTCAAGCAGGAGCTCGTGGAGATCCCAGCCCTGACCCTGGAAACGTTGGAGCCTGCTGCGCACAACACGGGCTCGCTACTGGAGCGACACATGGCAATACTGAGGTCGGCCGAGGCGCCCAACGCTGGTGGCTTCACGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCACCCGGTCAAGGATGAGCCCTCTTCAGATGGAGAGCAACAACAGGCTAGCGGGGACGAGTCGGCGGCGGAGGGTGGCGGGGGCCCGGGGGACGCGGGGCTCGGGGCGCGCGGAAGCCCCAAGAGCTGGACGCAGCGCGACATGGAGCGCGCGCTCGACGCGCTACGGAACCACAACATGAGCCTCACCAAAGCATCAGCCACGTACGGTATCCCGTCGACGACGCTGTGGCAGCGCGCGCATCGGCTCGGCATCGACACGCCGAAGAAGGAGGGGGCTACCAAGTCGTGGAGCGAGGCGGACCTGCGCGGGGCGCTGCGTGCGCTGCGGGCCGGCGCCATATCCGCAAACAAAGCCAGCAAGGCTTACGGCATCCCAAGCAGCACTCTGTACAAAATAGCGCGGCGTGAAGGAATCCGGTTAGCTGCACCGTTCAACGCGGCGCCGGTGTCGTGGCGGCGCGGCGACCTGCAGCGCGCGCTCGCCGCCATCCGCGCCGGCCGGGCGTCCGTGCAGCGAGCCGCCTCGCAGTACGGCATCCCCACAGGCACTCTGTACGGGCGTTGCAAACGAGAAGGCATAGAGTTGTCTCGTTCGAATCCAACACCCTGGTCTGAAAACGCGATGGGTGAGGCACTAGAAGCCGTCAGGATTGGTCAGATGTCGATAAACCAAGCAGCGATCCATTACAACTTGCCTTACTCCTCGCTTTACGGAAGATTTAAAAGATGCAAATATCCCAGTCAGGCTTTGCTTCAACAAGAAATGCAAAACGCGCCAGACACTATCCACAGCCAGCAAGAGATGACCTACTATCATCATCAAATGCCGATGTATTCGGAACAGGAGCCCTCAGTTCACGCGTACACTGTCAGCGACTTTGTGCCGACCACATCGATATATGACACCGCGACGCAGGACCCTTACTGCAACACTGCAGCACTGACGCCACAAACTGTGTACTATCACCAGACCTTCAGTAGCATAGCGACGACCAGCTGA
- Protein Sequence
- MPGSGKFAVKCEPPSDEEDNSPQLADIFVNSAIPSEFHSLTSIKVEVGCHDDERIPVLLHHLQVRMQSLTAMFIVPSAGSTCLLDPGSIPNADICADRISAEGLEELAPLTPAGPAATPVCVKQELVEIPALTLETLEPAAHNTGSLLERHMAILRSAEAPNAGGFTPLPLPLPLPLPLPLPLPLPLPLHPVKDEPSSDGEQQQASGDESAAEGGGGPGDAGLGARGSPKSWTQRDMERALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGATKSWSEADLRGALRALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLQRALAAIRAGRASVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSENAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYPSQALLQQEMQNAPDTIHSQQEMTYYHHQMPMYSEQEPSVHAYTVSDFVPTTSIYDTATQDPYCNTAALTPQTVYYHQTFSSIATTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -