Basic Information

Gene Symbol
ct
Assembly
GCA_013357705.1
Location
NW:1409526-1462463[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 5.9e-28 3e-24 84.0 0.0 2 72 519 590 518 595 0.95
2 3 1.1e-29 5.7e-26 89.6 0.1 3 77 927 1006 925 1008 0.90
3 3 5.7e-31 2.9e-27 93.7 0.0 3 75 1155 1228 1153 1232 0.95

Sequence Information

Coding Sequence
ATGCAGGCCTCTGCAGAGGCCAATTCGTTGGACCTACAGGCCATGCAATCCATGGATTGGTTGtttaagaaagaaagaatttaTCTTCTTGCACAATTTTGGCAACAGAGAGCTACTTTAGCAGAAAAAGAAGTATCAGCATTAAAAGAACAGCTTTCCGCATCAAACGATGGGAATTCTAAAACTGAGGGACACCAAAAAACATCACAGAATGTACAGAACACAGAACAAACTTACGACCAAAGTAACCCAAGATCACCTAATAATAACCTGGAACAAGAACTTCAGACCAAAGATAAAGAAaTCAGCCATTTGTTGGAGGAAGTGTCAAGATTGCAAGGCAATTTACAACGATTACAAGAGACTAGTGCTGCAACAACAGCGAGGCTGGAAGAGGAGCTTGAATCCCGAAGACAACATATCAGTAGATTGGAAAGTAAATTAGAAAGACAACGGGACTATGATGACTTAAAACGCGAAATAAGTGTTTTGCGATCTGTAGATTTATCACAAATACCAACAAGTGAACCAGGAAAGAGTCTCGAACATCTTTTGATGGAGAGGACAAAAGCCTTACAACAAGCAGAAAGTCTAAAACCACCAAGTACACCAGATACCATTGTTGCAGGTGGATTAGTCTCACCCCTGCAGCGCGCCGCAACGGCCTCGCCCTACGGGAACACGGGTGTCGGCGGCGGAAATTCCCTTACATCCCTCGTGTCCTCCCAAGCGGCAGCACCCACGCGCTCTACCCCAACACCTTCATCAGTAACCTCAACGGCCGCTTCGAATCTCCTCTTTCCACCTCCTCTTCAAAATGTCGAGACGTTTGGATCGTTTCTCGGCGAAGAAATAGTCGCCAATTGGAGGCGATCACTGGAACGTTCGATAATGAGTCAACAACAGCAATCATCAGTTGTACAATTACCCCAACTATCCCAACTCCAACAGGGAACCCAATCACCCGTACAACAAGGGCTGTTACAACAGCCATCATCAGTCCATGCCTTACATCCACCATTGACACCGAACCTAAATCACCTTCCATCGTCAACAGATCCAGCCTCGTCGACCAATGCACCAGCCAAATCGAGCACGCCACTCAGTGGATCATTCGACCCATCTGAAAAAGCACCAACGCCTATTCCAGGACACGAAACACCTGCGCCGCCGACGCCATCCTCAACAGTTGCTTTGACCTCGCCACCTGCTAGCTTCCAGCCACCCTCGACCATCATTGAATCTGGTAATGTTAATGGCTCATCAGTACCTGGAATGCCTACCGGTGTTCATCCGTCCAAAAGCCCTCAAGAGGAGTCGTGTcacaacaataacaataatagcCATCATTTAACCAACAATAACATTGGTCTCAACGTCCTCGATAGCCTCAAGAACCCATTTCGATTCGACGAGAGGACTCATCCGTTTAGATTTGGCGATGAATTTGGCGCAAGCATGACTAGTAGGCTTGGCGAATCGTTAATTCCTAAAGGTGACCCTATGGAAGCACGACTACAGGAAATGCTGCGATATAACATGGACAAATATGCATCGCAAAATCTCGACACGTTACATATCGCGCGAAGGGTCCGAGAATTATTGTCGATTCATAACATTGGTCAGAGACTCTTTGCCAAGTACGTCCTCGGCTTGAGTCAAGGCACTGTCAGTGAATTGTTAAGTAAACCTAAACCCTGGGATAAACTCACTGAGAAAGGACGCGACAGCTACAGAAAAATGCACGGTTGGGCATGCGACGAAAACGCCGTGTTACTACTCAAGTCCCTGATACCCAAGAAAGAATATGTTTCAGGCAAGGAGCAAGGTATACCAGCATTCGCACGTGGCTCTCAGGAAGGTGGTCCACCAGACATTAATGATGAGAGAATAGTTCACATGCTTTCGGAATCAAGCCAACTTCAGATGAGTCGCGAGCACGATACATCCAATGATGCAGATAGTAAAAGTCCAAGTCGATTGGGATGCCCGAGTCCATTTAGTAAAGAGAGATTTGATAGTCAGAATaaaagactaaaaaaataCGAGAATGATGACATTCCTCAAGAAAAAGTTGTAAGGatttatcaagaagaattaGCTAAACTTATGGGAAGAAGAGTTGAAGATTTACGTGGGCGTGAATTTCCTCCAAGTATGATTTTTTCGCCCTTTTTCAGCAGTACTCAAGGGATCCAAGGTCTAGAACGTACTCAAGAAGAAATAAGATTAGCACTGGATGCTTATCATAGAGagcttcaaaaattaaatgtcgTACCGGGTCAAACATCAGCACTAACAGGGCTTCCTGGTCTGCCAAATTTACCAAGTTTACTTGCACTCCATCAACAAGCAGTACATCAAAATCACCTATCTGCTAATGGAGCTGGAGTTCAAGATCTCAGTCTTGGTAAAACTGATTCTCGAAGTAAGCTGATGAATGGTGTTTCCgaagaagataaagaaaaaatggaagaagCTATGAGGCATGCAGGTAGTGCATTCTCTCTTGTGAGACCTAAACAAGAACCTACTGGAACACAATCAACTCCCGGAGGTTCAAGTGCAAGCTCACCTTTAGGAAATTCTATACTTCCACCTGCTATGACACCTAGCGAAGAATTTTCCGGAGCTGCAGCTGCAAGTCCTTTACAAAGAATGGCGTCTATCACTAATAGTCTAATTAGCCAACCGTCCACTCCAACACATCATGCAGCTAATCAACGACCACTTAAAGCTGTTCTACCACCGATAACACAACAACAATTTGACCTATACAATAATCTCAATACTGAGGATATTGTTAAAAGGGTAAGAAAAGTTGTGAAAGAACAACTGTCTCAATATTCTATTTCTCAACGGCTTTTCGGTGAATCAGTATTAGGTCTTTCACAAGGATCAGTTTCTGATTTATTAGCAAGACCTAAACCTTGGCACATGTTGACACAAAAAGGACGAGAACCATTTATACgtatgaaaatgtttttggaAGATGAACAAGCGGTACATAAATTGGTTGCAAGTCAGTATAAAATCGCACCAGAAAAGCTGATGAGGACTGGAGGCTACGGCGGCCTGCCTCGTAAGTTTAACTCAGctTGTGGAACACCAATGAAACCAATGCCACCAACAAAATTAGTGCAAGAACAATTGCAAAATGCAGCTAAAGCCCAGGCAGCAGCACAAGCAGCAGCGCATCAACAAGAAAGTCAATTACAACTTGGACCGCCACAACCAAGTTCACAACATCAACATCCTCAACCACCTCCGCCAATGATCTTAGCATCAACAACGCCTCATCATCCTCACACTCAATTAAACATACAAGAGTTACAAAAgaaacaacaacagcaacaacaacaacaaataaGTCTTCATTCACCTCATCAAATGACTCCATCGCCTTTACGAAGTCTTCATCCTCACATTTCTCCCAGTGTTTATGAAATGGCAGCATTAACTCAAGATTTAGACACTCAAACAATTACAACAAAAATCAAAGAAGCTCTCCTAGCTAATAATATTGGTCAGAAAATATTTGGTGAAGCAGTGCTAGGATTATCTCAAGGATCCGTGAGTGAATTATTGAGTAAACCTAAGCCATGGCATATGTTAAGTATTAAGGGTCGAGAACCATTTATTAGAATGCAATTGTGGCTTTCTGATGCTCATAACGTTGATAGATTACaagcattaaaaaatgaaagacgTGAAGCTAATAAAAGACGACGCAGTAGTGGCCCAGGTCATGACAATAGCTCAGATACTTCTAGTAATGATACTGCAGAGTTTTATCACGCAGCATCGCCAGGTCCCGGACCTCCTTCAGCTAAAAAACAAAGAGTTCTATTTTCTGAAGAGCAAAAAGAAGCTTTAAGATTAGCTTTTGCACTGGATCCTTATCCAAATGTTGctacaattgaatttttggcTGGAGAATTGGCGTTATCATCGCGCACAATTACCAATTGGTTCCATAACCATCGAATGCGCTTAAAACAACAAACTCCACATGGACAACCTGAGCCACAATCACCTAGAGAGCCAGGACAACCATTTGATCCAGTCCAATTCCGATTACTTTTGAACCAAAGATTATTAGAGATTCAAAAAGAACGATTAGGTCTTGGGAATATGCCAATACCTTATTCGCCTTATTTCAATCCGAATCTTGCAACTTTAATGAGCAATGCCTTGAAAGAACAGTGTTCAGGTTTAGACCTTTCGATGGGTGCTCTCAAGAGAGAACCCAATCAAGAGTATGAAGATGAAGATGCCGACGATGCTATGAGTAATCTCGGTAGTGAAGATTCCGATGGATCCAACAGCAGTTTAAAACGTGAACCGTCTGATCTTAATCAACCACCTACTGTACCAACAGCTGCGAGATCTAATCGAAGGAAACCCGCAGCACCACAATGGGTCAATCCAGAATGGCAAGAACCTGCGAGAACGGGTGatgaagttattattaatgGAGTTTGTGTAATGAAAACGGATGATTACGGTGTTAAAAGAGAACCTGAAGAAACTATTAGAGTGGAACCAACACCTGTTCAAGACAGATATGATGAAGATGCTCAAAGTGATGTGTCTTCAGTTTCTGGAAACAATGGACCGGATAGAGATAGTCCCAGTCCTAGTCCTAAATCCGAACAAAATAGTCCAATAGTTTCTCCCCGTCCTTCATCTTCACAAACCAATCTACGAAATTCTGATGAAAGTCCTAAAGAAGTTAAACATGAACCTGATGAAGCATGggactattaa
Protein Sequence
MQASAEANSLDLQAMQSMDWLFKKERIYLLAQFWQQRATLAEKEVSALKEQLSASNDGNSKTEGHQKTSQNVQNTEQTYDQSNPRSPNNNLEQELQTKDKEISHLLEEVSRLQGNLQRLQETSAATTARLEEELESRRQHISRLESKLERQRDYDDLKREISVLRSVDLSQIPTSEPGKSLEHLLMERTKALQQAESLKPPSTPDTIVAGGLVSPLQRAATASPYGNTGVGGGNSLTSLVSSQAAAPTRSTPTPSSVTSTAASNLLFPPPLQNVETFGSFLGEEIVANWRRSLERSIMSQQQQSSVVQLPQLSQLQQGTQSPVQQGLLQQPSSVHALHPPLTPNLNHLPSSTDPASSTNAPAKSSTPLSGSFDPSEKAPTPIPGHETPAPPTPSSTVALTSPPASFQPPSTIIESGNVNGSSVPGMPTGVHPSKSPQEESCHNNNNNSHHLTNNNIGLNVLDSLKNPFRFDERTHPFRFGDEFGASMTSRLGESLIPKGDPMEARLQEMLRYNMDKYASQNLDTLHIARRVRELLSIHNIGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHGWACDENAVLLLKSLIPKKEYVSGKEQGIPAFARGSQEGGPPDINDERIVHMLSESSQLQMSREHDTSNDADSKSPSRLGCPSPFSKERFDSQNKRLKKYENDDIPQEKVVRIYQEELAKLMGRRVEDLRGREFPPSMIFSPFFSSTQGIQGLERTQEEIRLALDAYHRELQKLNVVPGQTSALTGLPGLPNLPSLLALHQQAVHQNHLSANGAGVQDLSLGKTDSRSKLMNGVSEEDKEKMEEAMRHAGSAFSLVRPKQEPTGTQSTPGGSSASSPLGNSILPPAMTPSEEFSGAAAASPLQRMASITNSLISQPSTPTHHAANQRPLKAVLPPITQQQFDLYNNLNTEDIVKRVRKVVKEQLSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDEQAVHKLVASQYKIAPEKLMRTGGYGGLPRKFNSACGTPMKPMPPTKLVQEQLQNAAKAQAAAQAAAHQQESQLQLGPPQPSSQHQHPQPPPPMILASTTPHHPHTQLNIQELQKKQQQQQQQQISLHSPHQMTPSPLRSLHPHISPSVYEMAALTQDLDTQTITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDAHNVDRLQALKNERREANKRRRSSGPGHDNSSDTSSNDTAEFYHAASPGPGPPSAKKQRVLFSEEQKEALRLAFALDPYPNVATIEFLAGELALSSRTITNWFHNHRMRLKQQTPHGQPEPQSPREPGQPFDPVQFRLLLNQRLLEIQKERLGLGNMPIPYSPYFNPNLATLMSNALKEQCSGLDLSMGALKREPNQEYEDEDADDAMSNLGSEDSDGSNSSLKREPSDLNQPPTVPTAARSNRRKPAAPQWVNPEWQEPARTGDEVIINGVCVMKTDDYGVKREPEETIRVEPTPVQDRYDEDAQSDVSSVSGNNGPDRDSPSPSPKSEQNSPIVSPRPSSSQTNLRNSDESPKEVKHEPDEAWDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00729955;
80% Identity
iTF_00317368;