Basic Information

Insect: Chelonus formosanus
Gene Symbol: -
Assembly: GCA_028641665.1
Location: CM054005.1:2801336-2803245[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00013 0.015 16.1 1.0 1 23 300 322 300 322 0.99

2 7 7.1e-05 0.0082 16.9 1.4 1 23 328 350 328 350 0.96

3 7 7.7e-05 0.009 16.7 2.5 1 20 356 375 356 378 0.95

4 7 7.5e-06 0.00086 19.9 3.8 1 23 384 406 384 406 0.98

5 7 5.9e-05 0.0069 17.1 3.3 1 23 412 434 412 434 0.98

6 7 2.5e-06 0.00029 21.4 1.3 1 23 440 462 440 462 0.99

7 7 0.0002 0.023 15.4 0.8 1 23 476 499 476 499 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00013	0.015	16.1	1.0	1	23	300	322	300	322	0.99
2	7	7.1e-05	0.0082	16.9	1.4	1	23	328	350	328	350	0.96
3	7	7.7e-05	0.009	16.7	2.5	1	20	356	375	356	378	0.95
4	7	7.5e-06	0.00086	19.9	3.8	1	23	384	406	384	406	0.98
5	7	5.9e-05	0.0069	17.1	3.3	1	23	412	434	412	434	0.98
6	7	2.5e-06	0.00029	21.4	1.3	1	23	440	462	440	462	0.99
7	7	0.0002	0.023	15.4	0.8	1	23	476	499	476	499	0.96

Sequence Information

Coding Sequence: ATGTTAGcactcaataaaaatattaatatgcCAGCTAATAGTGATGTCTCAGAAGCATTATGTTTAGTATGTAATTTAAAGTTGGATATATCATCAagttttaacatatttaatacttttttgtcTGATAATGGAGAAATGCTGGCAAATTTTATATTCGGTGTTTTAAATCCTGTTACAAATTTATCTAGCTCTTACATCTGTTTACAATGTTACAATCTCTTCGTGATGTTAGAGCAGGCACAATCTACAGtaaaaagtattcaaaatgaaattataaaaacctATCAATCATCTAAATatgggaaaaaaattccaattaaaaatgaaatagttttaagtagcgatgataaaaaaaatgaaaaagttacaTCCCGTTCAAATTTCCACAAGAAATTGATTATCCCTTCTCATTTTAATGAGTTGAATCAAATAGAAACTGTTGGAGAGCTGAATAATGCTGATCCAAAAAAAACCGAATCACtgaataattctaaaaaaaatccaagttCATCCACTACAAATATACCTATTCcagaaaatttatatgtaCTTCCAATCGATCAAGATACAACAATAGAGACTGAAGGCACAGCTAtcattgataatgaaattcatAACATTACTAACCAAACAATAAGTTCTcccaatgaaaataatattcactcTAAAGAGATTCTAACAATAATAGATGAAAATGTAGCCTTAAAAGAAACAGCTCTTGAAAAGATACCAAGAGTCGTGAGTATTGAAGTTCATCCAAATAAATTAGATACATTCaATAATGCACTAAGCACAGATTATCTGAAAGAAAGTgcttatgaaaaaaaaaatggtgaaaaatcatttaaaaagccagggaaaaaatcaaaaataaatcatgaaaagtctttaaaatatacatgCATGACTTGTGATAAGAAATGGAAAACTTTATCAGATTTAAAAGCTCATGTTAAAACTCATTCGAATGTTCGACCTTTTATGTGTGAGAAATGTGGACAGGCCTATAAACATAAACATGCACTCGAAATTCATGTCGGCATGCATAATGGAATAAATCCATTTCAATGTTGTTTTTGTAGCAAAAGTTTCACTCAAAAAGGAGCTCTCATCAGACACTTACCGTTACATACAGGTGAAAAACCTTATCAATGTGATTTATGTGGTAAAAGATTTGCTCATCATTCTTCTTACAATATGCATATTCTCTCTCATACGGGCAAAAAACCTCACCAATGTTCTATTTGTGATTTATCACTTCTGTCATCGTCTCATTTGAAGAGACACATGCGAGTACATACTGGTGAAAAACCATATACCTGTACGTCGTGTGGTAAAAAATTTGCAGAAAGATATAATTTGCTTTCTCATCAAAAAATCCATACTTCTTCAAATGGAATTAAAGCTGACAAAAATATACAGTACAAATGTAAATATTGCAATCAGTTGTTCATAAGACAAGTACTCTTAGATGAACATATGGAACAACAGCACAAAGTACAAACTCaagctgaaaataattcaaattggTTACCTGAACAATTACAATCTGGAAATGTAAAAccaaattttgataaaaacgaTGCAGAATGGCAATGTTTTTCTTATGATAGAGTGCCGTCAGTTCAGGAAGATATAAAGACTGgatcatcaaatatttataaagaattcaatacaataatttaa
Protein Sequence: MLALNKNINMPANSDVSEALCLVCNLKLDISSSFNIFNTFLSDNGEMLANFIFGVLNPVTNLSSSYICLQCYNLFVMLEQAQSTVKSIQNEIIKTYQSSKYGKKIPIKNEIVLSSDDKKNEKVTSRSNFHKKLIIPSHFNELNQIETVGELNNADPKKTESLNNSKKNPSSSTTNIPIPENLYVLPIDQDTTIETEGTAIIDNEIHNITNQTISSPNENNIHSKEILTIIDENVALKETALEKIPRVVSIEVHPNKLDTFNNALSTDYLKESAYEKKNGEKSFKKPGKKSKINHEKSLKYTCMTCDKKWKTLSDLKAHVKTHSNVRPFMCEKCGQAYKHKHALEIHVGMHNGINPFQCCFCSKSFTQKGALIRHLPLHTGEKPYQCDLCGKRFAHHSSYNMHILSHTGKKPHQCSICDLSLLSSSHLKRHMRVHTGEKPYTCTSCGKKFAERYNLLSHQKIHTSSNGIKADKNIQYKCKYCNQLFIRQVLLDEHMEQQHKVQTQAENNSNWLPEQLQSGNVKPNFDKNDAEWQCFSYDRVPSVQEDIKTGSSNIYKEFNTII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00317676;
90% Identity: iTF_00317676;
80% Identity: -