Cfor003999.1
Basic Information
- Insect
- Chelonus formosanus
- Gene Symbol
- Prdm15
- Assembly
- GCA_028641665.1
- Location
- CM054002.1:369547-372605[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8.3 9.6e+02 0.9 0.1 2 9 33 40 32 40 0.85 2 15 1.7 2e+02 3.0 0.1 2 23 251 272 250 272 0.94 3 15 0.0042 0.49 11.3 1.6 3 23 281 302 280 302 0.95 4 15 4.4e-07 5.1e-05 23.8 1.2 1 23 461 483 461 483 0.97 5 15 0.014 1.6 9.7 0.2 1 21 487 507 487 508 0.93 6 15 8.7e-07 0.0001 22.9 0.8 2 23 517 538 516 538 0.96 7 15 0.11 13 6.8 1.9 2 20 543 561 543 563 0.93 8 15 1.9e-05 0.0022 18.6 6.2 1 23 567 589 567 589 0.96 9 15 0.00014 0.017 15.9 1.1 3 23 611 631 610 631 0.97 10 15 0.0027 0.31 11.9 1.3 1 23 636 658 636 658 0.98 11 15 0.0019 0.22 12.4 0.1 2 23 664 685 663 685 0.95 12 15 0.0014 0.17 12.7 6.3 1 23 690 713 690 713 0.96 13 15 0.00066 0.077 13.8 1.4 1 23 719 741 719 741 0.95 14 15 0.00026 0.031 15.1 6.6 1 23 747 770 747 770 0.97 15 15 0.12 14 6.7 6.6 1 23 775 798 775 798 0.95
Sequence Information
- Coding Sequence
- atgatGCCGCCATTGAAGAAGTcggtgataataaaaaatgataatgatgaaaaaattaataatcctgaagaaaagaaaacacAATCAGTATCGTTAgtttgtaACATTTGTGGTCAATCTCACGATACATATGAGTGTCCTTTTCTTACTAATTTACAATATaTTAAAGATTCTCCTGTCCTTTCTCGAGCACGCCAAACATTACCAAAAGACCtagaaattacaaaaatggcTGATGGATCATTAAGTGTAATTACCAAACGTGAATTTGAACGAGGAATAACATTTGGACCTTTTCAAGCTAAAAGAAACTGGGCCATGAATCCTGCAAATCTTTTTCCAATCAAAGTATTCGGCAACTCATCAGTCCCTCCTTGTTATTTAGATTATTCAGATGAAGATTTAAGCAACTGGATGTCTTTTATTTTACCAGCATCCAATGCTAAAGAACAAAACCTTATATGTTATCAAGTGaaacaagatattttttacaccGTTATGAAGATAATTCCACCTGGAGAAGAGTTGAGAGTATGGTACGCACCATATtatgcattaaaaatgaaaatgccTTTATATAATATGGATTTTGCTAATGTTGAAAGTGATGTGTTGAATCGTGATTTTGAGATAAAAAGTTTGGAGAACGAAAATGactcaattgaaattttaaatagagaTATAGCCCAAAAATTAGCTGAACGACTTCCAGCACAACAATTAGGTGCTAAATGTGAACAAGAAAATTGGACGTGTCTTATATGttcttcaacaattaattCTGTCGTTAATTATGCCAAACATTTAATGGAACACTATAAACCTCTTCTTGGAgcattttgtaatatttgcaatagaaaattttacaataactCCATTTtagagaaacataaaattatgaaacatTCAGATATTACAATTAGTAATGAAACCATGGGTATACCGACGTCTTCAAACCAACAACAACAGAATACTCAAACTGTTTTGAATATGAGTGATATGGATGGACAAACGTCAGATGctatgaaagatatttttgaaaagtttaaatcaggaaaaacaataacagaaagtgctttaattataaatgataaagaaaatcaatCAGATAGTTCTCTTCTCGATTCTCATGCTATGAGTATGAatgattttcttcaaaatagtGGAAATCTAATGGAAACCTCCTCCTTAAACTCCTCTTTAAAGTCTATTTTGGAAAATCAATgccttaatatcaatattagtTCTATGGCAGATTCCATTCTTTCAGATAATATTTCTACTGCTGATGGTGTCAGATTTAATGTTGACGAACTTGCATCGGAACTCTCTTTAGACATCACAGCAGATGATGAaagtgcaaataaaaaaataaacaatttcgATTGTGATATTTGTGGTAAAAAATTCCAGAGGCCTGATTATCTTTATCGACACTTGAGAAAACATACTGGAGAATTTATTTGTTCTGGATGCCTTGGTGTTTTTgcgagaaaagaaaatttattaactcacGTGTGCTCTTCTCAAAAAACTAATGTTAATTTAGAATGTCCATATTGTTCAAAAACATTTGCggtaaaaaaatacttaaaaagaCATATGGCTCGACATTTTGAGCATAACAGATGTAAATGGTGCAGAAATACTTTTACTTCTCCATTAGAATTAAAATCACATGAATGTAATGCTCCAAAACATATTTGTAATCAATGTAATAAGATATTTGTTCATCGAGCTCATCTCAATCGTCACATGAAACTTCATTCAGAACCTAAACCTATTGttcagaaaattaaaaaaaaattaaccgaAGATGAACCAGCTATTTGTGAAAAATGtggtgatatttttaaaactcgtTACAGTTTAAAACAACATTTAAAATCTCATGGAGAAAGAACGTATGAGTGTGATATTTGTCAGAGACGTTTTCATAGAATTGGTGTATTAAAAGAACACAAACAAATTCACCAAATTGCTCAAATACCTTGTGATGtttgtggaaaaaaattaaaaagtaagaaGGCTCTGGATGTTCATGTTTTGCttcatggaaataaaaaatttcaatgtgaAAAATGTGAAAAGAGCTTTTTTCAAcgatgtaattatttaaaacactaTAAACAAATTCACACAGAGAAAATAATGCATAAATGTCCTCACTGTCCAACTCAATTTGCTAATGAAATCAGTTTCAATAAACACGTAGCAGGTCATATAAAACCATCTAAATTCACATGCTCATCTTGTCATAAGTCTTTTCACGGTCAGTATCAGTTGAAAAGACACATTCAATCTACCCACAGTGGTATAATTTATCGTTGTCCTTTTTGTAAGATGACAGCAAGACACAAACATAGTATGAGAAGACACTTTGAAAGGCAGCATAAAAGCTTGAATAATGAATGGGATCAACCAGGATTTGTTAATCAACTAATTGAAAAGTTGGCTTTAAATCAAGAGAAAGAAGATAACgttgataatattgataattcaaaaatttcattatcagtTTCTGAAGTCAATGAGACGTTTTCAAATGTACCAGAAGTAGTCCAAGTAGATAATCGTAATGAAACATTGATTGATGATTCAGAAATATTACTCCAATCAACTGAAATTGATCATGGTACCGTTGAAGCCTCTGAAATATCTTTGACTGAAGTTCCTCAGCTCAGTATAAGTGATACAGATTCTCAACTCACTGAATCTGTATTAAACAATGCTTATATCTTTGGAGAAAATGGAGATATAATGTTCTATGTTCTTGATAATAATcctgttattaattattaa
- Protein Sequence
- MMPPLKKSVIIKNDNDEKINNPEEKKTQSVSLVCNICGQSHDTYECPFLTNLQYIKDSPVLSRARQTLPKDLEITKMADGSLSVITKREFERGITFGPFQAKRNWAMNPANLFPIKVFGNSSVPPCYLDYSDEDLSNWMSFILPASNAKEQNLICYQVKQDIFYTVMKIIPPGEELRVWYAPYYALKMKMPLYNMDFANVESDVLNRDFEIKSLENENDSIEILNRDIAQKLAERLPAQQLGAKCEQENWTCLICSSTINSVVNYAKHLMEHYKPLLGAFCNICNRKFYNNSILEKHKIMKHSDITISNETMGIPTSSNQQQQNTQTVLNMSDMDGQTSDAMKDIFEKFKSGKTITESALIINDKENQSDSSLLDSHAMSMNDFLQNSGNLMETSSLNSSLKSILENQCLNINISSMADSILSDNISTADGVRFNVDELASELSLDITADDESANKKINNFDCDICGKKFQRPDYLYRHLRKHTGEFICSGCLGVFARKENLLTHVCSSQKTNVNLECPYCSKTFAVKKYLKRHMARHFEHNRCKWCRNTFTSPLELKSHECNAPKHICNQCNKIFVHRAHLNRHMKLHSEPKPIVQKIKKKLTEDEPAICEKCGDIFKTRYSLKQHLKSHGERTYECDICQRRFHRIGVLKEHKQIHQIAQIPCDVCGKKLKSKKALDVHVLLHGNKKFQCEKCEKSFFQRCNYLKHYKQIHTEKIMHKCPHCPTQFANEISFNKHVAGHIKPSKFTCSSCHKSFHGQYQLKRHIQSTHSGIIYRCPFCKMTARHKHSMRRHFERQHKSLNNEWDQPGFVNQLIEKLALNQEKEDNVDNIDNSKISLSVSEVNETFSNVPEVVQVDNRNETLIDDSEILLQSTEIDHGTVEASEISLTEVPQLSISDTDSQLTESVLNNAYIFGENGDIMFYVLDNNPVINY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00317641;
- 90% Identity
- iTF_00317641;
- 80% Identity
- -