Cfor003041.1
Basic Information
- Insect
- Chelonus formosanus
- Gene Symbol
- -
- Assembly
- GCA_028641665.1
- Location
- CM054001.1:10993992-10996744[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0073 0.84 10.5 0.4 3 21 8 27 6 28 0.85 2 14 3.7 4.2e+02 2.0 0.0 2 20 34 52 33 54 0.91 3 14 0.71 82 4.3 0.3 1 12 232 243 232 252 0.89 4 14 0.028 3.3 8.7 0.5 1 20 360 379 360 381 0.94 5 14 4.1e-05 0.0048 17.6 0.5 2 23 386 407 385 407 0.97 6 14 6.2e-05 0.0071 17.0 2.0 1 23 418 440 418 440 0.98 7 14 0.024 2.8 8.9 0.2 1 23 459 480 459 480 0.94 8 14 0.0019 0.23 12.3 0.0 2 23 486 507 485 507 0.95 9 14 4e-05 0.0046 17.7 4.8 1 23 566 588 566 588 0.99 10 14 1.7e-06 0.0002 21.9 3.7 1 23 594 616 594 616 0.96 11 14 9.1e-05 0.011 16.5 5.3 1 23 622 644 622 644 0.98 12 14 1.2e-06 0.00014 22.4 0.8 1 23 650 672 650 672 0.98 13 14 7.6e-05 0.0088 16.8 0.2 1 23 676 698 676 698 0.99 14 14 0.00024 0.027 15.2 0.1 1 23 706 728 706 728 0.98
Sequence Information
- Coding Sequence
- atggGCTCATCAGTCCTAGTGTGTCCTATGTGTTGTGGCGAAACTTTTAGCAATTCGCAGTCacttaaatatcatttattaagtaTGACCGATAATTTATATTGTCCCAGTTGCTCTCAGAGATCGGATTCTATTGCTGCTTTAATCCAACATTTAGATAAATGCGGCGAAAATGTTGCTAACACTCTTCAGATGGACTGTAATGGTTACAAAGATGAACATACAGAAATTCTGATggATACAaatgttgaagaaataaatgagaGTTTCTTAGCAACTGTGAACCATCAAGAAATTATGATTGTAGGTGAACCAAGGACAATAGAAGTTGACGAGAATGgtGAAATCAAAGTTGTTAATTCTATGGACTTCAATggaaaatcaatcaaatttcaATCACTTAATGTTAAAGCAGAAAATGATGGTCTTCAATTAAATACCAAGCATTCAGAATCCGAGGAAAGAGATCTAGATGGAACACCTGTGATAAGTATTCCAGAATCAATGAGTGATCATTCAGACTCAAGAAATATGATAGCTCTTTTAGCAGATGGAACtgaagaatatttagaaagtgatgaaaatttaattgaaataaaacgtCACGATAATGAAATCGGAGacgatgaattattaaaagtgaAACAAGAGCTCTGCGAGGTAAAAAATGAAGAgaCAGATTCTGCAGCAATCTACAATTGTAGCAGTTGTGGGATGAGTTTCAATTCAGTCTTAGATCACATTAAAGAATTTCATGATGGTCAAGAAGTAGTTTTAGAGATGGTAGAGGACATTTCTGATGTTTCCGAACCTTTACAATGTGAAAAAGAAGTTCCGGAGCGTGTAACTCGTGGAAAACATCGACAAACTATGAACACATTAAGAACTGAAGAGTGTATTGATAGTGAAGGTCGACTTTATACTAGGAAAGTAGTTCAAATTGAGAGATTTTGGGATAAAAACGCATCAAATACATCTTACACTACACCAAAGCCTGCatcaatgattgaaaaatttttctctaatgCTGAAGGTGTTGAAACACaaggaaaaaatcaaataatttctacAAAACGTTACAAGTGCAATCAATGCTTAGAAGAGTTCGGTAGATTAGGAGAATTTCGTGCTCATGCATGTTTAAATGGAACTAATCAATGTGATCGTTGTGATCAAGCTTTTACATCAGCCAAGGCCCTTCAAACTCATTTAAAACTTCATGATAGTAACACTAATAATGGACAAAAGgcttttatttgtaaaatatgtggcacagaatttatttcacataAAAGTTTAAGATTACATTCGAGAATGCACGCTCCAGTTAGAGCTAGACATGTAGATGCTCCTGAAGGGAAACCTACGGCAAATTTCACTTGTCTTGAATGTggAAAAACACTTTCTGAATCTTATCGAGAAGCTCACATGGCTTTACATACGGGAGATACAGTAACGTGTGCAGTTTGTAATAGGAAATTCGACTCTGCCGATAGTCTAGCAATGCACGCTGCAGTTCATCCAGAATTAGGAATTCAAAATAGTCAATCTCAAAATCAAAtcgaaatatttgtaaaaccATCATCACCTTCTCCTACACTTCCAGATCCTTCTTCTTccttaaaaattgtaaatgtgacaaattctaaaaatttgaattcagTGGAAAATGATAATGGAGATGCTTTAAAACCTTACCAGTGTCAACATTGTGGAAGAAGATTCACGAGACCGcatgaaaaagtaaaacatGAAAGGATTCATACTGGTGAAAAACCACACGCTTGTGaggTCTGTGGAAAAACTTTTAGAGTTTCATATTGTCTCACACTTCATATGAGAACGCATACAGGAGTACGTCCATATCAATGTCAACATTGTGGCAAACGATTTAAGGCATCTTCTGTTTATAATCATCATCTTTTAACTCATGGAGACGAAAGAGCGTATACATGTCCTTATTGTCCAAAAACCTTTAAGACACGAGTTCAACTAGCTGGGCATAAAAATAGTCACACAAAACCCTTCCGTTGCACTGAATGTTCAAGACCGTTTGCATCTCTATATGCAGCTAGAGCTCACATCCAAACTCATAAAAaggataataatttgaaatttagttGTATGATTTGTGGAGCATCGTATGGACGGGCTTTTGCATTGAAAGATCATTTAAAAGTGCACGATCCTGATGTTTTAATGCCTCCAGAACCTGCAAGAGAAGAGGAAGTGCACGAAGCTTTCTTACTCGATGAAGAAGAAGTGTTGGAAGAAGAATTAGTGAATTCTGGTATTCAAATATCAATAGATGAACCTGAATGA
- Protein Sequence
- MGSSVLVCPMCCGETFSNSQSLKYHLLSMTDNLYCPSCSQRSDSIAALIQHLDKCGENVANTLQMDCNGYKDEHTEILMDTNVEEINESFLATVNHQEIMIVGEPRTIEVDENGEIKVVNSMDFNGKSIKFQSLNVKAENDGLQLNTKHSESEERDLDGTPVISIPESMSDHSDSRNMIALLADGTEEYLESDENLIEIKRHDNEIGDDELLKVKQELCEVKNEETDSAAIYNCSSCGMSFNSVLDHIKEFHDGQEVVLEMVEDISDVSEPLQCEKEVPERVTRGKHRQTMNTLRTEECIDSEGRLYTRKVVQIERFWDKNASNTSYTTPKPASMIEKFFSNAEGVETQGKNQIISTKRYKCNQCLEEFGRLGEFRAHACLNGTNQCDRCDQAFTSAKALQTHLKLHDSNTNNGQKAFICKICGTEFISHKSLRLHSRMHAPVRARHVDAPEGKPTANFTCLECGKTLSESYREAHMALHTGDTVTCAVCNRKFDSADSLAMHAAVHPELGIQNSQSQNQIEIFVKPSSPSPTLPDPSSSLKIVNVTNSKNLNSVENDNGDALKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYQCQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCMICGASYGRAFALKDHLKVHDPDVLMPPEPAREEEVHEAFLLDEEEVLEEELVNSGIQISIDEPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00317623;
- 90% Identity
- iTF_00317623;
- 80% Identity
- -