Cfor002282.1
Basic Information
- Insect
- Chelonus formosanus
- Gene Symbol
- SCAND3
- Assembly
- GCA_028641665.1
- Location
- CM054001.1:4309867-4312197[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.7e-05 0.0043 17.7 3.6 1 23 281 303 281 303 0.99 2 14 5.2e-05 0.006 17.3 4.6 2 23 401 422 400 422 0.97 3 14 0.00017 0.019 15.7 2.1 1 23 428 450 428 450 0.95 4 14 0.00023 0.026 15.3 2.0 1 23 456 478 456 478 0.98 5 14 2.9e-06 0.00033 21.2 0.4 1 23 495 517 495 517 0.98 6 14 2.8e-06 0.00032 21.3 3.2 1 23 523 545 523 545 0.98 7 14 0.00011 0.012 16.3 2.0 3 23 553 573 551 573 0.97 8 14 0.00037 0.043 14.6 0.7 1 23 579 601 579 601 0.99 9 14 2.1e-06 0.00024 21.7 0.6 1 23 607 630 607 630 0.97 10 14 5.6e-06 0.00065 20.3 0.6 1 23 636 658 636 658 0.98 11 14 0.0012 0.14 13.0 5.4 1 20 664 683 664 686 0.94 12 14 7.1e-06 0.00082 20.0 0.9 1 23 692 715 692 715 0.96 13 14 5.1e-06 0.00059 20.4 4.2 1 23 721 743 721 743 0.98 14 14 0.0013 0.15 12.9 5.1 1 23 749 771 749 771 0.99
Sequence Information
- Coding Sequence
- ATGAATCAACAAAGATCAGATGAATATCAagctttttttgtttatgaagATCTGTTTTCAAgatatgtaatattaaaacCTCTCAAAGAAGTATCAGATATTGAagtcattgaaaaattgattgatattttttttttgattggtGCTCCAAAAATCCTTCAAAGCGATCATGGTAGAGGATATACTGCAAATTTAGTTCGAAAATTAAGAAGTGTAATTCcaacattaaatattgttcATGGAAGTGTTTTAAGATCGAACGAACATCGGaaagattttaaaacacttgtAAAATTATgggaacaaaaaaattcaccgATGTTATGGTACGAAggacttaattttattcaagctTTTGTAAATACCTCTAAAATTTCTGAGAGTGAAAGTGAAACAACATCAGACACAACTCctgctaaaatattttttgaatcaaatCTAGAAGACAATCTTGTACAGTTGGTACGTGATGGGAGTTCTTTTGATGAAATCTGGACAGAAGAAGACTGGATAAGCAAgacgataaaaaatgatttttccaaaaattgcCATGAAGATTTGAATGTTGGggctgaaataataatatctaatGATACTGAGAatactgataaaattaatgcTGCATATGCGTCTGTAGTAGatgaaaaaagatttgatgatattgAAGTTTATAAATCGTCAATATCAAATTCTACAAGTTTTGATGAGTCTATAGATAGTAAtgatacaaaagaaaatattgatactTCTAATTTAcctagtataaaaaataaagcgTTAACTGAAATCCAAAAGACTGGTACGATTGCCAAAAAATCTGCTGTCTccagcaaaaatattttcaaatgtagTAAGTGTAGTCGAATTTTCGGGcgaataaatcatttaatgaatCATATGAGAAGCCATAAAccaaaattaaaagataaaaataaatataagaatgaTGTAGTTTTACCCGTGAATTCAGAAACAGATCAACTAACAAGTAACTCTGAAAGAATACTGAATAATCATATTGAAAcacaaataaaagttgaacAAGAAGTGAACTctgaaaaaatactaaataatagTGTTGAAActcaaataaaaagagaacAAGAAGTTACTAGCAATGCTAAAGATGAAATAGACTGTCATGTAAAACCTACGGTATTATTAactaaatcaatcaaaatacCTAGTAAACCAACGTTGGAGTGTACATTTTGtcacaaaaaatttacttttcgtAGTGTTTTGAAAAGGCATCTGCGAATTCATACTAATGAAAGACCATACTTTTGTagaatatgtaataaaaattttaaacaattgggTCATTTAAGTCAACATGCAATGGGACACATAGATTTTCGATCGTTCCAATGTCCCATATGtgatcataaatttgaatcaCACCAAGTGTTGAAAGATCATATAATATCTCACAAAGATGATAGTGGTCAAAGCATTACAATTCGGAAACCATATCGTTTATATGAATGTGATATTTGTAAGAAAGTATTTTCAGCAAAAAGTGTTTTGGAGCGACATATTTTTACTCATACTCATGATCGCCCCTATAGttgtaaaatatgtaataaaaaatataagcaAGCAGGGCATCTCAGGTCTCATATGTTTGTTCATACAGGAGAAAAGAAATTTGGATGTACAATTTGTTTCAAACGATTTAGCGTTTCACATGCATTGAAAAAACATCTTCTGATTCATACTGGTTACAAGCCATATCAATGTAACATCTGTGAAATGAGATTTCTGGAACAAAGAAATCTAAATTCACATTTATTGACTCATACTAATGATAAACCTCACGTATGTACAATTTGtggtaaaaaatatactttagcTGATACATTAAAAAGACATATTATAACAGCCCATGAGATTGGTAAAACCTATCAGTGTGAAATTTGTGCTAAAATGTTTAGTCAATTAGGACATCTTGTTGCTCATAAAAAAGTTCATAATGATGAACGACCTTTTCAGTGTTATATTTGTGATAAGAgttttaaacataataatgTTCTTAAATCTCATCTTTTATGTCATTCTGACTTCAAACCGTTTGAGTGTGATTATTGTAAAGCTACTTTTTCAAGAAAGAATAATATGAAAAGtcatattatttctattcacATGAATGAACGGCCGTATTTTTGTTGTATATGTggtaaaaagtttaaaaaaagtactaATTTGACGATGCATATAATGATGCATggcaattattcaatttatcaatgcCAGTActgttgtaaaaaattttatgggCTCGATTATTTAAGAATACATATGAGAcggcataaaaaaaattttaaataa
- Protein Sequence
- MNQQRSDEYQAFFVYEDLFSRYVILKPLKEVSDIEVIEKLIDIFFLIGAPKILQSDHGRGYTANLVRKLRSVIPTLNIVHGSVLRSNEHRKDFKTLVKLWEQKNSPMLWYEGLNFIQAFVNTSKISESESETTSDTTPAKIFFESNLEDNLVQLVRDGSSFDEIWTEEDWISKTIKNDFSKNCHEDLNVGAEIIISNDTENTDKINAAYASVVDEKRFDDIEVYKSSISNSTSFDESIDSNDTKENIDTSNLPSIKNKALTEIQKTGTIAKKSAVSSKNIFKCSKCSRIFGRINHLMNHMRSHKPKLKDKNKYKNDVVLPVNSETDQLTSNSERILNNHIETQIKVEQEVNSEKILNNSVETQIKREQEVTSNAKDEIDCHVKPTVLLTKSIKIPSKPTLECTFCHKKFTFRSVLKRHLRIHTNERPYFCRICNKNFKQLGHLSQHAMGHIDFRSFQCPICDHKFESHQVLKDHIISHKDDSGQSITIRKPYRLYECDICKKVFSAKSVLERHIFTHTHDRPYSCKICNKKYKQAGHLRSHMFVHTGEKKFGCTICFKRFSVSHALKKHLLIHTGYKPYQCNICEMRFLEQRNLNSHLLTHTNDKPHVCTICGKKYTLADTLKRHIITAHEIGKTYQCEICAKMFSQLGHLVAHKKVHNDERPFQCYICDKSFKHNNVLKSHLLCHSDFKPFECDYCKATFSRKNNMKSHIISIHMNERPYFCCICGKKFKKSTNLTMHIMMHGNYSIYQCQYCCKKFYGLDYLRIHMRRHKKNFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00317613;
- 90% Identity
- -
- 80% Identity
- -