Cfor017883.1
Basic Information
- Insect
- Chelonus formosanus
- Gene Symbol
- -
- Assembly
- GCA_028641665.1
- Location
- CM054006.1:10678048-10678596[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.9e-07 0.00059 19.8 0.0 3 41 14 52 12 56 0.92 2 3 5.6 4.2e+03 -2.1 0.0 29 39 139 149 139 151 0.84 3 3 3.7 2.8e+03 -1.5 0.0 22 28 173 179 172 182 0.85
Sequence Information
- Coding Sequence
- ATGGACGgtgatcaaaaaaaatattataaatggaATAAAGAGGATTTAGAAAGAGCGTTGTCGGCTTTAGAGAAGAAGGAAATAAGTTTGAACAAAATATCTGCCACATATTCTGTTTCAAAACCAACTATTCTGCGTCATGCTAGGAAACGAAATAAGATTACCAATGATTTGACTATGCATGAAGGCAGACCCACTACTTTTGATTTGAAGCTGGAAAATATGTTAGTCAAACACATTCTAGCCttagaaaaaaatctgtttGGATTGACTATCAATGATGTCCGGAAATTAGCATTTGACATAGCAAAAAAACATAACATTTCtcacaaatttaataaaaacaggAAAATAGCTGGCAAAGCTTGGTTTTACGCTTTTAAAGGTCGTCATCCAGAACTGAGCGTAAGACAACCCGAAAGCACATTCATAAATAGGGTAAAAGgctttaataaacaaaatgtttATGGTTTCTATGATCTGTTAGAAAAGATAATTGACGAAAATTGCTTAGAAGCTGCAAATATATTCAATGTCGATGAAAGTTGA
- Protein Sequence
- MDGDQKKYYKWNKEDLERALSALEKKEISLNKISATYSVSKPTILRHARKRNKITNDLTMHEGRPTTFDLKLENMLVKHILALEKNLFGLTINDVRKLAFDIAKKHNISHKFNKNRKIAGKAWFYAFKGRHPELSVRQPESTFINRVKGFNKQNVYGFYDLLEKIIDENCLEAANIFNVDES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -