Cfor014865.2
Basic Information
- Insect
- Chelonus formosanus
- Gene Symbol
- lola
- Assembly
- GCA_028641665.1
- Location
- CM054005.1:4066898-4070230[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-08 1.1e-05 25.4 0.1 9 40 409 441 408 446 0.87
Sequence Information
- Coding Sequence
- ATGGAGGATGATCAACAGTTCTGCCTTAGGTGGAACAATCACCAAACCACGCTCATCCAAAACTTCGACACATTGCTAGAGAGCGGCACACTGGTTGACTGCACCTTGGCAGCGGAGGGGAAGTATCTAAAGGCCCACAAAGTAGTCCTCTCCGCGTGTAGTCCGTACTTTGAgGGCCTCCTCAGCGAGCACTATGACAAGCACCCCGTCTTTATACTTAAAGACGTTAAATTTAAAGAACTTAAGGCCATGATGGACTACATGTACAGAGGGGAAGTAAATATTTCCCAAGACCAATTGGCAGCACTTTTAAAGGCGGCTGAGTCCCTCCAAATTAAGGGCCTTTCGGAGAGTAAAACGGGAGGTAGTGGTAGTACTAGTAATAAAACAGACTCAAGGCAACAAAAAGTTCCACAACCGACTGCACCATCGTTGGACATTCCACATGCGTCTTCCGGCCtcacaatagaaaaaaataaagttccTAGACAAAGTTTGGCACAAACATCAGTAGGAGATTTGCCTGAAGATTCAGCAAGTCCACAATTACCTAAAGGAATTTCCTCCAGGGAAGGATCACAAAGTCCAACCGccagaaaaagaaaaaggctCAGAAGAAGAAGTCTTGGTGATGATAATCCTATAGAAAACCATGAAACCTCAAACTCGAGCGATATGCCTCATCAACAAATGAGTGTGCCTGCTCTTGGTGTAGCACCTGTAGCTGACGAGAAATCCCATGCTGACCCAACGGATTCTCTCGGAAGGTCGGCACTTATGCAACAATTGACAAAACCTGCCGACGAAATGTTAcagATGCCAGTTGAAAAACCTGAGCCTAATGATAGCCTGATTGAGCCAAAGTCTGAGTACCTGGAGGACCCTGAGGAGAGCGTAGAAGACTTAACGcttgatgatgatatgaaTGACCTCAATGAAATGGAACAAGATAACAACAGAGCCGGTCCCTCACACGATCCTTCTCAACATCCTGGATGGGGGGCGGGAGCGCGCTCTTGTACGAGAGGTAATTCGGTAGGTGTTGACAGTGACATAAACGTCAGTGGTGGTGGTGTTGGAACCCACTGGACTTCTCATTTCCTCGATTATAAAAAGACACCGAATATAAGAAGACGTGGTCCCGACGTTGATGTATCCGCGTTGCTCAAGTCTCTTGCCACCAAACAGGGTAGAAAATATAGTTTAGATTCCGTGAAAATGTCTCTGGAAGCGATATTACAGCAAGGCATTAGTACAACTCAAGCATCAGAAATGTATGGAATTAATAGATCCACTCTTCagttttatctaaaaaaattaaatgtcgTCAGACGAAGATGGAGACAGCCAAGTCTCGCAGCGTGGCATGTAACAGGAGATAGAAGTAATGCAGGCGGAGTAGTTAGTTCGGTAGCCGGAGCTCCGGGGGCAACTGATGAAGTGTTTTTAGCTGCCCAGGAGGCCGCGCAGGCCCACCGCGACTCTCAAGGTAGGCACACTTGA
- Protein Sequence
- MEDDQQFCLRWNNHQTTLIQNFDTLLESGTLVDCTLAAEGKYLKAHKVVLSACSPYFEGLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSESKTGGSGSTSNKTDSRQQKVPQPTAPSLDIPHASSGLTIEKNKVPRQSLAQTSVGDLPEDSASPQLPKGISSREGSQSPTARKRKRLRRRSLGDDNPIENHETSNSSDMPHQQMSVPALGVAPVADEKSHADPTDSLGRSALMQQLTKPADEMLQMPVEKPEPNDSLIEPKSEYLEDPEESVEDLTLDDDMNDLNEMEQDNNRAGPSHDPSQHPGWGAGARSCTRGNSVGVDSDINVSGGGVGTHWTSHFLDYKKTPNIRRRGPDVDVSALLKSLATKQGRKYSLDSVKMSLEAILQQGISTTQASEMYGINRSTLQFYLKKLNVVRRRWRQPSLAAWHVTGDRSNAGGVVSSVAGAPGATDEVFLAAQEAAQAHRDSQGRHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01418424;
- 90% Identity
- iTF_00687104;
- 80% Identity
- iTF_00316892;