Cfor011784.1
Basic Information
- Insect
- Chelonus formosanus
- Gene Symbol
- ttk
- Assembly
- GCA_028641665.1
- Location
- CM054004.1:5603740-5605688[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.5 6.4e+03 -2.7 0.0 8 21 86 100 84 100 0.65 2 2 2.2e-12 1.6e-09 37.6 0.1 1 45 359 403 359 403 0.96
Sequence Information
- Coding Sequence
- ATGGGTACGGCATCAGATCAACATTACTGCTTACGATGGAACAATCATCAAGTCAACATGTTGAACGTCTTCGACGAATTGCTACAAAACGAGGCGTTCACCGATGTCGCTATCGGAGTTGACGATGGCGTTTTTGTCAAGTGCCATAGAATGATTCTAGCTGCTTGTTCGccatattttcaaaaattattcattgaaataccTTGCAAAAATCCTATCATCATCCTTAAGGATgttaaatatcatcaaataaaagcAATACTTGAATATATGTATAGAGGTGAAGTGAGCATTGCTCAAGATCAATTAGCAACATTATTAGATGTTGctgaatgtttaaaaataaagggTCTGGTTGAAGACAATGGTTCATCACCTTCTAATACATCAAATACTCATTCACCCCGGGCGTCTCGACGTCGGGAACGAAGAGAAACTGAAGAATCATTGTCTCCACCACCAACTATTACCaccagtaataaaaataatatcgcACACAACTCCGAAAGTGGCAACGGTCAACCCTCTCCACCACACTCAACCAGTTCCACCTTTTACGGCTATGGAAAATCATCATCAACCCGTGCACACAGCGAATCTCGTTTTGCAACAACACCTCTGTGGAGTCATCCGTATGTTGGACAGAACCTGGCGGCATCTGTAGCACATCAAGCAGCATCATCACTCTCGGCTCATCATGCATCGCTTTTTGCTGCTCACTTCGACAACGACCTACATAACCGTAAGCCTTTTATCCCAAATTTCCCGATGCCTCAAGACACTCCTATACTACGAACTGTTCTTGGACAAGGTCACGCTGATAGCTCCCAAGGGATTCCACTGCTCCATCCGGACACTCAAGGATACCGTAGCCCAAGCAATGGTTCTGCCCATGACAACGCAGATGTGCGCCGCAACAGCATGGATGTCTCCCGAGTTCACAGCCCCTATGACTCCTACACCACCGAGGACAACGATAAGAAGCACTCTCCTAAATCATTTGACGACAACAAACCACGTATCATGAATTATGGTTCAGGTCAGAAGCCTGAATGGAAACGATATAAACAGTACACGAAAGATGACATAAAAGCAGCTATTGATGCCGTTAAATCAGGAATGAGCGCACTTCAAGCATCTCGTAAATATCGAGTACCATCACGTACACTTTATGATAAGGTAAAGAAACTTGGTATAACCCATTCACGTGGCGGTGGCGTACGGCGTAGTACAAATCATAGTGGAGCAAGTTTTCCATATGGCATTGGTGGTAATATCAATGGCAGTATTTACGCACCTGTAGCTGATAACGACAATGAAAACCGAAGTGGATTAACTGAAAGTCCAGCGTCCATTATTGAAGCTGTCTTTGCTAAGAGTCGGGAAAATCTTATTGATCATGATACTTCAATGGATGCATCAAAAAGAACACCAAGTCCAAGTCAGCCTCATCCGAATTATGATACGCAACAACAAAAAGAAGAACAATCACAACAACAACAATCACAAATTCCTCCTTTGTCCGAAGATAATGACAATCAGGTAGAAGATTTATCTATTAATCGTAAGTCAGATGTACGAGTTATCGTTCCGCCCattattaaagaagaaaaaattgacaatCCTGAAAATCAAAATTCCAAATGA
- Protein Sequence
- MGTASDQHYCLRWNNHQVNMLNVFDELLQNEAFTDVAIGVDDGVFVKCHRMILAACSPYFQKLFIEIPCKNPIIILKDVKYHQIKAILEYMYRGEVSIAQDQLATLLDVAECLKIKGLVEDNGSSPSNTSNTHSPRASRRRERRETEESLSPPPTITTSNKNNIAHNSESGNGQPSPPHSTSSTFYGYGKSSSTRAHSESRFATTPLWSHPYVGQNLAASVAHQAASSLSAHHASLFAAHFDNDLHNRKPFIPNFPMPQDTPILRTVLGQGHADSSQGIPLLHPDTQGYRSPSNGSAHDNADVRRNSMDVSRVHSPYDSYTTEDNDKKHSPKSFDDNKPRIMNYGSGQKPEWKRYKQYTKDDIKAAIDAVKSGMSALQASRKYRVPSRTLYDKVKKLGITHSRGGGVRRSTNHSGASFPYGIGGNINGSIYAPVADNDNENRSGLTESPASIIEAVFAKSRENLIDHDTSMDASKRTPSPSQPHPNYDTQQQKEEQSQQQQSQIPPLSEDNDNQVEDLSINRKSDVRVIVPPIIKEEKIDNPENQNSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00317558;
- 90% Identity
- iTF_00317558;
- 80% Identity
- iTF_00316902;