Cfor014430.1
Basic Information
- Insect
- Chelonus formosanus
- Gene Symbol
- ttk
- Assembly
- GCA_028641665.1
- Location
- CM054005.1:799896-801831[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 7.6e-07 0.00057 19.9 0.0 2 37 194 229 193 236 0.88 2 5 9.5e-13 7.1e-10 38.7 0.0 5 43 247 285 244 287 0.85 3 5 0.089 67 3.6 0.0 7 34 301 327 297 332 0.80 4 5 6.2 4.7e+03 -2.3 0.0 32 44 342 355 341 356 0.78 5 5 2.2e-13 1.7e-10 40.8 0.1 5 40 359 394 357 397 0.92
Sequence Information
- Coding Sequence
- ATGACTGAAGTTAAAACTGAAAGTAAAgatgaacaaaatttttgttttacgtGGTGTGACTATGAAAATCACTTGTCAGGAGTTGTGCAGCAACTTCTTAATGATGGATGTATGGTTGACGTGACGCTTTCTGTTGCTGGTGAGAGAATTCATGCTCATCGAATGGTTTTATGTGCTTGTAGTacattatttcaaGAAATACTCAGTGAAACACCTGAAGATCATCctacaattataattagtgATATTTCACCTCAAGACATGAAGTCAATAGTAGAGTTTTCTTATCGTGGTGAAGTCAGAATACCTGTTGAAAACATCAACAGTTTATTAGAGGCAGCACATCTACTGAAAATATGTGGGCTTATGGAGATTGAGAGTTTGGATGATGATGTATCTAATGAATGTAAAGAAGTTGCATTAGATTCGGTAGGTGATTCAAATGAATCTGATAGTGCCTGGAAATCTGCCGAGCGTGATCCAAATACTGATGAAGCTTATTTATTGAGTGAGTCGACAGACaagaaaatttctaaaaagcGGAAACGCAGAAGAGATTATACTAGGAAAGagtataataatgatatgCTCGAAATGGCTTTGAGTGATGTTCGTGCAGGTTTATCTTTAGTAGATGCATCcactaaaaataatgttcCACGTTCAACATTGTATATGCGAGCTAAAGCGTTAGgattacaattaaatacaaCTAGACATGAATATCCTGCTGAATGCTTACAAGCAGCTATAAACGCAGTCATGAGTGGTTCAAGTTTTCAACATGCATCTGAATTGTACAGCATACCAAAAACAGTTTTATGGAGGagaattcaaaaagaaaattatcaatctTTGAGATCGGAAACTAAGAGATCATATGATTCTGATAAAAGAGAAGCTGCTATAAAAGCTTTACAAAGAGGAGAAAATCTAACAAAAGTATCGTTAGAATTTCAGatacCTAAGACAACGTTATTTCgtgataaagtaaaattagtaGATCAGGGAAAATTACCAGAGACTTTTTGGAAGAGAAGAAAGACTGAAGATGAAAAAGTGAAACAAATGCGTTTAGAACAAGCTGTTGCTGCTTGTATGGAGGGCAAAATGTCTCAAGCAGCGGCAGCTATTGCATACCATATTCCAAAAACTACTATATGGCGTCGGCTtcaacaagaaaataaaaaaatagataggACGAAAAATCCTAAACGACAATCACAGCTCATACAATCGAttgtaaaagaagaaattgaacaaaaaaatgattccgATACTACATTGTGTGaggtTTCATCTGAAATTCCATTGACATACATTGATGAAAACAATGTACCAGAAAATTCTGTCATCATTTTAACTAAAGGAGAAGTTGATGAACTTAATTTAGGAGATGATCAACAAATTATAGTTAGTACGGATTCTGATCATGAGTATGTTCCATGTACAATAAGTATCGAAGACTCAACGAATTATGCAACGACTGATAGTTGA
- Protein Sequence
- MTEVKTESKDEQNFCFTWCDYENHLSGVVQQLLNDGCMVDVTLSVAGERIHAHRMVLCACSTLFQEILSETPEDHPTIIISDISPQDMKSIVEFSYRGEVRIPVENINSLLEAAHLLKICGLMEIESLDDDVSNECKEVALDSVGDSNESDSAWKSAERDPNTDEAYLLSESTDKKISKKRKRRRDYTRKEYNNDMLEMALSDVRAGLSLVDASTKNNVPRSTLYMRAKALGLQLNTTRHEYPAECLQAAINAVMSGSSFQHASELYSIPKTVLWRRIQKENYQSLRSETKRSYDSDKREAAIKALQRGENLTKVSLEFQIPKTTLFRDKVKLVDQGKLPETFWKRRKTEDEKVKQMRLEQAVAACMEGKMSQAAAAIAYHIPKTTIWRRLQQENKKIDRTKNPKRQSQLIQSIVKEEIEQKNDSDTTLCEVSSEIPLTYIDENNVPENSVIILTKGEVDELNLGDDQQIIVSTDSDHEYVPCTISIEDSTNYATTDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00316905;
- 90% Identity
- iTF_00316905;
- 80% Identity
- iTF_00316905;