Basic Information

Insect: Cheilosia vernalis
Gene Symbol: Sry-delta
Assembly: GCA_949126925.1
Location: OX421358.1:34475293-34476408[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 8.7 1.1e+03 1.2 0.4 1 17 11 27 11 28 0.84

2 7 2.5e-05 0.0032 18.6 0.4 1 23 148 170 148 170 0.96

3 7 0.00059 0.074 14.3 0.2 2 23 175 196 174 196 0.98

4 7 1.5e-05 0.0019 19.3 2.6 2 23 203 224 203 224 0.96

5 7 0.00084 0.11 13.9 2.8 1 23 230 252 230 252 0.97

6 7 6e-06 0.00076 20.6 4.0 2 23 260 281 259 281 0.97

7 7 1.3e-06 0.00016 22.7 1.5 1 23 288 310 288 310 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	8.7	1.1e+03	1.2	0.4	1	17	11	27	11	28	0.84
2	7	2.5e-05	0.0032	18.6	0.4	1	23	148	170	148	170	0.96
3	7	0.00059	0.074	14.3	0.2	2	23	175	196	174	196	0.98
4	7	1.5e-05	0.0019	19.3	2.6	2	23	203	224	203	224	0.96
5	7	0.00084	0.11	13.9	2.8	1	23	230	252	230	252	0.97
6	7	6e-06	0.00076	20.6	4.0	2	23	260	281	259	281	0.97
7	7	1.3e-06	0.00016	22.7	1.5	1	23	288	310	288	310	0.98

Sequence Information

Coding Sequence: ATGGCAATGACAGAGGACTATCTGTTTACATTTAGGTGTTTACTATGCCGACAAAAATACGATGCAAACGCTAACTTCAAGAACATCAAAtcaacaaatgttcactcatcTAAAAAGTCCATTAAAGACGTTCTCCTGCACCTTACCAAATGTATTAAAACGGAAGTTCTTCTTGAGGACAACTCATACGTCTGCGGCTCGTGTTACGAAAAGCTGATTGATTACGATCAAATCATGCTTCAACTGCTAATGCATCAAAGAGAACTTTCAAGTATGCTAGAAACCTCGATAAATACGCTTGACGACTTTGTGAAGAAAGAGGAGGACGAAAGTGATTTATCAATGCAAGGTGTATCTGATGACGATGGTCATGATGATAGTAATGAAGAGCCCTGGCATAATACTACCCAAGAGTTTTCAACAAATTCTTCATTTACCTCATACCAATGCTCAATATGTCAGAGGAAACTAAGTTCAAAATCTTCTTTAAGTGCCCATCTGGATGCACATGCTAAAGCCAAAAAATGCAACATTTGTGGTGTCTTTCGGAGAGATGAGGAGTACCTGGAATTGCATATGAATGTCCACGAAGGCAAATCAGAAAATGAATGTCGATACTGTCCCAAAAGGTATTCTCGGCGTTCTAATGTTATTCGGCATATGCATTTGCATTGGGATAAGAAGAAATTTCAATGTGAAAAATGCGGTCTAAGATTTTCCCAAGGTAACCTGTTATACAACCATAAGATGCATCACGAAGCGGAGGAAAAGCCGTTGGTTTGCAATAAATGTGGTCAGacattcaaatcaaaaaaaacgtTCAGTCATCATATGATTACGCATCTGGAGGATCGGCCTATGTACCCATGTGAGATGTGCGGCAAAAAATTCACCGAGAAGTATACGCTCAAGATACATTCGAAAACCCACAAAGGGCTTAACGAAGAAGATTCTGAAGCGATAAGAAGACTTCGTTCAACACAAATAAAGAAGGAGAAACAAATACAAGAGTATCCTTGCATCATATGCGACGCAGTATATGGTGCCCGAGATATTTTGGAAGCACACATGGCCGAAGAACACGATGTTATTGGTCAAATtaaggtttttatttga
Protein Sequence: MAMTEDYLFTFRCLLCRQKYDANANFKNIKSTNVHSSKKSIKDVLLHLTKCIKTEVLLEDNSYVCGSCYEKLIDYDQIMLQLLMHQRELSSMLETSINTLDDFVKKEEDESDLSMQGVSDDDGHDDSNEEPWHNTTQEFSTNSSFTSYQCSICQRKLSSKSSLSAHLDAHAKAKKCNICGVFRRDEEYLELHMNVHEGKSENECRYCPKRYSRRSNVIRHMHLHWDKKKFQCEKCGLRFSQGNLLYNHKMHHEAEEKPLVCNKCGQTFKSKKTFSHHMITHLEDRPMYPCEMCGKKFTEKYTLKIHSKTHKGLNEEDSEAIRRLRSTQIKKEKQIQEYPCIICDAVYGARDILEAHMAEEHDVIGQIKVFI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00313792;
90% Identity: iTF_00311342;
80% Identity: -