Basic Information

Insect: Cheilosia vernalis
Gene Symbol: -
Assembly: GCA_949126925.1
Location: OX421360.1:28186094-28190249[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0098 1.2 10.5 1.4 3 21 988 1006 987 1007 0.94

2 8 0.021 2.6 9.5 0.7 1 23 1014 1036 1014 1036 0.97

3 8 0.00044 0.055 14.8 2.1 2 23 1041 1062 1040 1062 0.96

4 8 8.5e-07 0.00011 23.3 2.3 1 23 1068 1090 1068 1090 0.99

5 8 8.5e-06 0.0011 20.1 0.2 1 23 1096 1118 1096 1118 0.98

6 8 0.0014 0.17 13.2 1.7 1 23 1124 1146 1124 1146 0.98

7 8 0.00055 0.069 14.4 2.3 1 23 1152 1174 1152 1174 0.95

8 8 0.00011 0.013 16.7 0.7 1 23 1180 1202 1180 1202 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0098	1.2	10.5	1.4	3	21	988	1006	987	1007	0.94
2	8	0.021	2.6	9.5	0.7	1	23	1014	1036	1014	1036	0.97
3	8	0.00044	0.055	14.8	2.1	2	23	1041	1062	1040	1062	0.96
4	8	8.5e-07	0.00011	23.3	2.3	1	23	1068	1090	1068	1090	0.99
5	8	8.5e-06	0.0011	20.1	0.2	1	23	1096	1118	1096	1118	0.98
6	8	0.0014	0.17	13.2	1.7	1	23	1124	1146	1124	1146	0.98
7	8	0.00055	0.069	14.4	2.3	1	23	1152	1174	1152	1174	0.95
8	8	0.00011	0.013	16.7	0.7	1	23	1180	1202	1180	1202	0.98

Sequence Information

Coding Sequence: ATGGAATTTAACTTACTTAGTTGTAATCTATTCATCAAACACATCAAGGAATGTTTATCTGGGCGATTTCCCGATCAGCCTCAAGCTAGATTACCTTTAAATCAGGAAGTATCTAACACTGCCATTAACAACTTGCTTAAATGTGATTTAGAAAGCAATATAGCTGGAGATGAAAATGCGCAAAAAACTGATCAAAATTCGTTGGACCCACTGGCTTCTCTAAAACTGGAATTTCCAAAGGATAACGAAGAGgcaACACACTTGAACAAGGAAAACACTTTCGAAGAAGATGTGATATGCCCCTCTGACTATCAAGACGAGGATGATTTGACCATAAACAAAATAGCCCACCGTAAGGTGGTAGAAGGGATAATTGACGAATACAAAAACCATCCAATTTTGTGGGATACAAATCTGACAGAAACATCACAGCTATCAGACATAAATTGCCATTACGAAGAGATTCAAAAAAACATTAACTCCAGATTCAAGATGAATTTCAAAGTTTCAGAGCTTCGAACTCAAATTCTGAATTTGAAAAGTGAATATAGAAGAGTACTTAAAAAACACGAGAGCTTCGCAAATAATGACAACGGTGCGGATTCGTCATTTCAACCACAGTTGTGGTActttaataaaatttcttttattGGGACTACAGACAAAGATGACCAGATATATGACCGCGACTCAGATTTAGGTCGACTTCCAAAAGTCGAAGTTTCGGATGAAGAAGAGTCATCTGATTCATCGCTTCAGCCAACTCCAAGTAAGCCAAAAAAACCGCCACGAGCACGACCGAGTTCCAAGATATTGAGCGAACCGAATATTATATCGGATATAATCggtcaatataaaaaatatcctTTTTTGTGGGATCAAACAGCATCCCTCTATAGTGACAAATATGCACGCAAGGACGCATTTCGTAAAATAGCTACGTGTATtaacaacaaatttaacaaaaacgtTACGGATAAAGAAATAAGGCGACAGATAGTCAACTTGCGGAGTGGATACAGGCGTGCTCAAAGAAAGAAACACAGGGCCAACTATCGTATAAGTTTATGGTATTATGATGAGCTCTCATTCATTGATAAGAGATCTGATCAGGCCGAACAAAATTGCCAGatagCAGAAGAAGATTCAATAGATGATAAAGCAGAGCTTAAAGAAGTTCCCGGCGTAGATGAGAACGAAGAATCGGACAATTATAATCCATGCGAAATTGACAATGATCATGATAATGATGAGGATACTGGCGATGATAATATTGACGATGAAAGCGATATTGAAGGAGAAAGTTTATCTTGCCGTCGAAAGAgggataaaaaaataatattaagtcTCATCGAAGAATACAAACAACATCCTTGTTTGTGGAATAATTACTTGTACAAAACTAGCAGTCGCTTTAAACGCTACGACGCGAACAAAGCAATTACAAAAGCTATtaatagtaaatttaaaaaagcaTTCAGCGACACAGAGATTCGAAATAAACTTGTTCAGCTAAGAAGCGGCTACAGGCGAGTTCTGCGAAAAAAGGAGGCATTCGAGAAGAAGCACATaaatgcaaaaagaaaattCCACTCACAGTTGTGGTACTTCGATAAGATGTCATTCATTGGAGCAACTGATATGGACTTTTCAGTGAGGCATCGAAAAAGAACGAAAACCAAATCAGAAGACCTTCAGAAGGAAGAACACATAATGGAGAAAGAAGATATCAATACATTGTCCGTTGAAAGCGACGAATACTCCAATAGAGGCATGGATAGTTTTCAAGAAAACGATTTAGTGATCGATAAGGATCAATCTGATGAAGACGAACAAGAACTAAGCGAACCTGACTCctcaacaaatcaatttaataagTCGATTACTAAAAACAGGGAACTTTTAACAGGAATTATAGAGGAGTATAAGAAATTACCCTGCCTATGGGCAGTGCAATACTACAGTAATGATAATCTCAGCCGACGAAATGCTTTTCGAAAAATGGCTAAGATCATAAATGCTAGGTTCAATACCCAATTTACATTCAAGGACCTAAGTCAAGAGATAAGTAAGTTGCGTTGTACGTATAAACGAATGTTGCGCAGGAAACAGGAAAGTGTAGATGGCGAATTCAAAACAAAGATGTGGTATGCCGATATGTTGTCATTTATCGAAAAAAGTGATGAGATTAAGGAAGATAGCCAATTGGATATCATGCCGCCAAATGACAATTTGGAATGCGAAGAGATGGATCCAGCAAAAAGTAACGAACATATCTCTGAAATCATAGAGCTTTATAAGTCTTCGCCTGTCTTGTGGGACCCCAAGCATCCACAACATATGCAATGGAGTGCGCGAAGGAAAGCCATAgagaaaataattgaaacactAAGCCATGATCATGATTACAAATTGACAGTCGAAGAACTGCGATATCAAATTCGCTTCCTAAGAGAATCATACTTTCGTGCCGTAAGAGAAGAGATTAGTGCTAAGCAAGGCGATCTGTACAAATATGCACCGAAACCGTTTTTTTACGACAAAATGTCATTCCTGGAACCGTTCGCTGAAAAGAATCGTTTGAAAATTCCAAAACTGGAAATCGCTGTCCCAGCTGCTTTTACAGAAGATTTCACTTTTCTGACCGAAAACAAACCCCTTATGATAGATTTCATAGAACTTTATAAGTCACATGATTGTTTGTGGAATCAAGAACATAAAGATCGAAATAATCCAGCAGCTCATTCCGATGCCTATGACAAGattataaatatgtttttgcagAACGATATCATTTTTACAAAAGAGAAAGTTATGTCGGCTATCAGTTTCCTCTACTCAATTGTTTCGAATGCACAGAAGACTCCTGAATTTCACGATCCTAAAGTAAATGAACAGAGAATTTGGCTTTATGAACGTCTTAAATTCCTGGAAAATATTTCTGGAGTCAAAGACAATTATTGCGCTCACTGCGGCCAATATTTCTGCACATTAGCCGCATATAAGAAACACCAAATGGAAATCAATACTGAATATCCGTACAAGTGTTCCGTATGCAATGCAGGATTTATTTCCCGTTCGAAATACGCGTTCCACCAAATAACACACAAAGAACCACAAAAATGTGAACAGTGTGGCTTTCAAACGTTCGACAAGTACAATTTCAATGTCCACATGCGCCGGCACAAAGGCATCCATTCATTTCGGTGTGAACACTGTGAAAAGGGTTTTGTTACCTCGACAGAACTTAATCGACATCTGCGGATGCATACAGATTCAAGACCCTTTATTTGCGATGTTTGCGGAAAACCATTGCCATCGAAATCCGATTTTGAACAACATATGAAACGGCATCGCAATCAACGAGATCACAAATGTGAGTTTTGTGGAAGTGCTTTTTTCACTTTGACAACTCTGCGAGATCACATGGCCTCGCATTCATCTGAACGGCAACACGTGTGCGAAGTTTGTGGTGCGGCATTCAAGCGGAAAAAGACACTCCATCAGCACAAGGCCTTGCATTTAGAGCGAAAGAAACACGAATGTAAAATTTGTGGAAAGTTGTTTGCACAACAAGCTGGAGTATACTCTCACATGAAGTCGCACGAGGTTGTAGCAAGTTAA
Protein Sequence: MEFNLLSCNLFIKHIKECLSGRFPDQPQARLPLNQEVSNTAINNLLKCDLESNIAGDENAQKTDQNSLDPLASLKLEFPKDNEEATHLNKENTFEEDVICPSDYQDEDDLTINKIAHRKVVEGIIDEYKNHPILWDTNLTETSQLSDINCHYEEIQKNINSRFKMNFKVSELRTQILNLKSEYRRVLKKHESFANNDNGADSSFQPQLWYFNKISFIGTTDKDDQIYDRDSDLGRLPKVEVSDEEESSDSSLQPTPSKPKKPPRARPSSKILSEPNIISDIIGQYKKYPFLWDQTASLYSDKYARKDAFRKIATCINNKFNKNVTDKEIRRQIVNLRSGYRRAQRKKHRANYRISLWYYDELSFIDKRSDQAEQNCQIAEEDSIDDKAELKEVPGVDENEESDNYNPCEIDNDHDNDEDTGDDNIDDESDIEGESLSCRRKRDKKIILSLIEEYKQHPCLWNNYLYKTSSRFKRYDANKAITKAINSKFKKAFSDTEIRNKLVQLRSGYRRVLRKKEAFEKKHINAKRKFHSQLWYFDKMSFIGATDMDFSVRHRKRTKTKSEDLQKEEHIMEKEDINTLSVESDEYSNRGMDSFQENDLVIDKDQSDEDEQELSEPDSSTNQFNKSITKNRELLTGIIEEYKKLPCLWAVQYYSNDNLSRRNAFRKMAKIINARFNTQFTFKDLSQEISKLRCTYKRMLRRKQESVDGEFKTKMWYADMLSFIEKSDEIKEDSQLDIMPPNDNLECEEMDPAKSNEHISEIIELYKSSPVLWDPKHPQHMQWSARRKAIEKIIETLSHDHDYKLTVEELRYQIRFLRESYFRAVREEISAKQGDLYKYAPKPFFYDKMSFLEPFAEKNRLKIPKLEIAVPAAFTEDFTFLTENKPLMIDFIELYKSHDCLWNQEHKDRNNPAAHSDAYDKIINMFLQNDIIFTKEKVMSAISFLYSIVSNAQKTPEFHDPKVNEQRIWLYERLKFLENISGVKDNYCAHCGQYFCTLAAYKKHQMEINTEYPYKCSVCNAGFISRSKYAFHQITHKEPQKCEQCGFQTFDKYNFNVHMRRHKGIHSFRCEHCEKGFVTSTELNRHLRMHTDSRPFICDVCGKPLPSKSDFEQHMKRHRNQRDHKCEFCGSAFFTLTTLRDHMASHSSERQHVCEVCGAAFKRKKTLHQHKALHLERKKHECKICGKLFAQQAGVYSHMKSHEVVAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00313767;
90% Identity: iTF_00311318;
80% Identity: -