Cver022652.1
Basic Information
- Insect
- Cheilosia vernalis
- Gene Symbol
- -
- Assembly
- GCA_949126925.1
- Location
- OX421361.1:45472178-45477680[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1 1.3e+02 4.1 0.1 2 23 244 266 243 266 0.94 2 17 0.31 39 5.8 0.1 6 23 275 292 275 292 0.96 3 17 4.6e-07 5.8e-05 24.1 0.8 1 23 298 320 298 320 0.98 4 17 0.041 5.1 8.5 4.1 1 23 326 348 326 348 0.95 5 17 0.0035 0.44 11.9 0.3 1 22 354 375 354 377 0.90 6 17 3.7e-05 0.0046 18.1 0.6 2 23 384 405 383 405 0.94 7 17 0.0018 0.22 12.8 0.4 2 23 414 436 413 436 0.95 8 17 0.01 1.3 10.4 0.1 2 23 444 466 443 466 0.95 9 17 0.0011 0.14 13.5 0.3 1 17 472 488 472 489 0.94 10 17 0.063 7.9 8.0 0.8 2 23 624 646 623 646 0.96 11 17 0.064 8 7.9 1.8 6 23 655 672 655 672 0.99 12 17 0.00014 0.017 16.3 1.3 1 23 678 701 678 701 0.98 13 17 1.6e-05 0.002 19.3 4.9 1 23 708 730 708 730 0.98 14 17 0.00037 0.047 15.0 0.2 3 23 737 758 735 758 0.96 15 17 0.00066 0.083 14.2 0.3 2 23 767 789 766 789 0.96 16 17 0.00045 0.057 14.7 1.0 1 23 796 819 796 819 0.94 17 17 0.054 6.8 8.2 1.8 1 17 825 841 825 842 0.91
Sequence Information
- Coding Sequence
- atgttATGCATTTTGTGCTTGAAAGCCAAAAATGAGGTAATAAATATGTTCGATGCTCACGGACTCAGTCTAAATGTCAGCAGTATTGTTACCACGCATTTTTGGCTCCAGCCGAATGAGGATAATCCCAACGCCAAAGTTATCTGCTCCATTTGTTGGAATGCATTGGAATCGTTTCACAAGTTCTATACGGAAGTCGAGAAGGCCCATGTTGCGCTATTTGCAGTGCTTCCCGCGGTTAATCTGTTAGGGGGTGAAACCTCCCCATCACCGAATATTATGAAAACATATCCTGATAAAAGCGTTGTAAAACCATTCAACCAGAGTCATATTCATAGAAGTGACTTCACGATTTCAGACACAAAGGTGGAGATTAGTGAAGATTGCAAAGTTATTTTGACAGAATACGATGTTGAAAAGTTTGATAACCCACTTAAAACCGTTGATGATTTTGATGATAAAGTGCAAGATATTAAATCTGAGTCAGAGTCAGAGATTCCTCTATCGAATCTGATCAAATCTGGGAAATCGCCGAGCTTcgtagagaaaaaaataaatagaaaccgCACCTTGAAGAAAAAGAACCCGAAAGAGGAAATAGCTACCGACGATGAGGAAACTGATGAAGAATCATTTAAACAGTGGCCGGCGTCCACTTATGCAGAAGAAACGCGTCATAAAATAGGCTATAAGCATCTTGATGCAGTTATCGAATCAACTTTGAACTTATCTTGCTATATTTGCAATGTTCCGCTGTCGGGGTATACTGCCTTCAGGGATCACTATCGAGCAGCTCACAATGAATTCGGTTACATTGCGTGTTGTGACAAGAAATTCGATAAACGGGTCGCATTAGTTGATCACCTTCTATTTCATAAGAATCCCGAGTACTTCAAATGTGAAATATGCGATCGCAACTTTGCGAATCGCAAAAACCTGAAAGCGCACCTTAAAGGACACGACAAAAAGTTCATATTCCACTGTGATAGCTGTCCAAAGAGCTTCCATCAAAAGCTGCTGCTCGATCGGCACAAGGATATACACATTTCGGATCGTACCTTCAAGTGTGACGAATGCGGAAagctCTATGCCTCAAAGTTTACATTGGGACAACACGTCTACGGAGTGCACAAGGGTGGCTATACCAAAGTGTGTGACCAATGTGGGAAAGTGTTTCGTGACCTGGAAACTTTTCGCCGACATAAGGTGGTCCATACAGACGAACCAAAACCGTTTGTTAGTTGTGATAAATGTGGTATTAAGCTCGCAAATAGATCCGTGCTTTTAAAGCACATGAAGTATAAACACACGGAAACGAATGTCACACAGGTGTGCAATATTTGCGGCAGCATATCTTCAAATATATTTGCTCTAAAGCGCCATATAATGTACATGCATACATACGAACGAAAGTTCAAGTGCTCCATGTGCGACAAGGGATTCAAAACGGCCATCAATCTTAAGAATGGTAACTTTCAAGTTGTTCCGGTTGCAGATATCAAAGTGGAGTCGTGTGGGGAACCTAAGGTTGATCTTACAAAGGTTGAAGTACAACTATTTATCGCTGAAGGGAGTATGGAAAAACAAGCGAATATAAAATCTGGCTCAGAATCGGATGTGCCTTTAGGTAAATTGAGTGCACTTCAAAGCCCAACAAAGAGTAGTGAACCCGTGTTGCACACTGATGATTCCACTAATGGAGATTATAACAATGAAGGTGATACCGACGAAGACGAAGAAAATGATACTGACTATAAAGTACCTGAAAACAAGGAGACAGATAACCATACCACCGCCAAGAGAGAGTATAATACGCACCGAATTCCCTGTAAACAATTTGATGAGGTTATCAAGCAGAATATGAAGCTGTCGTGTAACGTTTGTCACATTCCTTTGGAAAGTTTTTTCACCCTCAAGGAACACTATAGATCTGCTCACAATAAAACCGGCTACGTAACCTGTTGTGAGAAGAAATTCGACAGCCGTCATGGCCTGGTTCATCATATTCTTATGCACAAAAACCCAGAGACATTCAAGTGTATGAAATGCGGTCGCCTCCTAGCCGACCGCAGAGGCTTGAAGCGCCACATGAAAACGACACATGTAAATGAGGATCGTATCCATCAGTGTCAGAAGTGTAAAAAGGGTTTTCGGCGGAAAGAACTGCTAGAGAAGCATGAAAAAACACATGTGAGACCTGAAGTTATATGCGAGCAGTGTGGCAAGGTAGTACGCGGCAAGCAGTATCTCAAACAACATCAGTTGCGGGAACATTCGGGAATACCGAAACAACGTCAACAGTGTCCCAAGTGTGGCGTTTATCTTGCGGATAATTCAACTCTATCAACTCATATGAAGTACCAGCATCCAGTTGTTAAAGTTATACACGAGTGTCATATTTGTGGGAAAATATCAGCCACTGGTTACGGCCTAAAGCGTCACATAGAATACATGCACACACGGGGACGGCCGCATAAGTGTACATTGTGCGAAAAGGCTTTCAAGACGCTCAAGTGTCTTCGGGTGAGTGATATTATTTTGTGA
- Protein Sequence
- MLCILCLKAKNEVINMFDAHGLSLNVSSIVTTHFWLQPNEDNPNAKVICSICWNALESFHKFYTEVEKAHVALFAVLPAVNLLGGETSPSPNIMKTYPDKSVVKPFNQSHIHRSDFTISDTKVEISEDCKVILTEYDVEKFDNPLKTVDDFDDKVQDIKSESESEIPLSNLIKSGKSPSFVEKKINRNRTLKKKNPKEEIATDDEETDEESFKQWPASTYAEETRHKIGYKHLDAVIESTLNLSCYICNVPLSGYTAFRDHYRAAHNEFGYIACCDKKFDKRVALVDHLLFHKNPEYFKCEICDRNFANRKNLKAHLKGHDKKFIFHCDSCPKSFHQKLLLDRHKDIHISDRTFKCDECGKLYASKFTLGQHVYGVHKGGYTKVCDQCGKVFRDLETFRRHKVVHTDEPKPFVSCDKCGIKLANRSVLLKHMKYKHTETNVTQVCNICGSISSNIFALKRHIMYMHTYERKFKCSMCDKGFKTAINLKNGNFQVVPVADIKVESCGEPKVDLTKVEVQLFIAEGSMEKQANIKSGSESDVPLGKLSALQSPTKSSEPVLHTDDSTNGDYNNEGDTDEDEENDTDYKVPENKETDNHTTAKREYNTHRIPCKQFDEVIKQNMKLSCNVCHIPLESFFTLKEHYRSAHNKTGYVTCCEKKFDSRHGLVHHILMHKNPETFKCMKCGRLLADRRGLKRHMKTTHVNEDRIHQCQKCKKGFRRKELLEKHEKTHVRPEVICEQCGKVVRGKQYLKQHQLREHSGIPKQRQQCPKCGVYLADNSTLSTHMKYQHPVVKVIHECHICGKISATGYGLKRHIEYMHTRGRPHKCTLCEKAFKTLKCLRVSDIIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -