Cver012818.1
Basic Information
- Insect
- Cheilosia vernalis
- Gene Symbol
- -
- Assembly
- GCA_949126925.1
- Location
- OX421359.1:36039935-36040894[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-09 1.8e-06 28.4 0.0 3 39 18 54 16 58 0.91 2 2 3.9 2.9e+03 -1.1 0.1 12 22 136 147 135 148 0.76
Sequence Information
- Coding Sequence
- ATGCCGACTATCCGCAAAGCAAATAAGGGCTTGAGAGCAACATGGTTAGAAAATAATCTAGTTGCTGCATTTAACGAGGTAAAGCAGAAAACCCTATCAATAAATGCAGCTGCAAAGAAGTACAATGTTCCAGCGACTACCCTTAGAAGAAGGCTTCAGAACGGTGACGTCAAGAAGCATGTTCTAGGTGCTCCCATATGCCTTGGAGAAGAAAATGAGCAGAAAATTGTGGTTCACATCAAGAGACTACAAGCCCATGGATTCGCTCCTAACAGAAAAGAGTTGTGCCGTATGGCATTTGAACTGGCAGACAAATACAAGCCAAGACATAATTTTAATAAGGCTGACAGCACGGCTGGATATGGATGGCTTCGACTCTTCTTAAAGCGCCATCCGGAACTTTCTGTGCGTAAATCCGAGGGGGTGTCCATGTCTCGCGCAAATGGTATGGAAAAAGAGGAAGTTTCAAGGTATTTTAAGTTATTGGAGGAAATATTCATTCAAAATCAAATAATTGACAAGCCTGGCAATCTATTTAATATGGACGAAACTGGCTGCCAGCTGAACAATAAACCCGAACATGTTATTGCAGAAAAAGGTTCAAAGAATGTCGCTACGGTAACTTCAGCAGAGAGGGGGGAAACAGTTACTGTCATTGCCTGTTGCAACGCAGAGGGAAGTTTCCTTCCACCAGCATGTGTTTTTAAggggaaaagaaagaaaaccgaATGGGAAGAAGGGATGCCTCCTGGCTCTGTGGTTTATATGGGTGAAAAATCtgcatatataaataaaaaatttttttttacttggctAAAGGACCATTTCGTTACAAGAAAGCCTATTGGTAAAGTTGTTCTCGTACTCGACGGCCACTCTTTATCAAAACGGCAGCTTTatcaaaaaatgcaatttccggTTTCAAATCGACTGGTATTTTTCCGTTCAACCCTGAAGTAA
- Protein Sequence
- MPTIRKANKGLRATWLENNLVAAFNEVKQKTLSINAAAKKYNVPATTLRRRLQNGDVKKHVLGAPICLGEENEQKIVVHIKRLQAHGFAPNRKELCRMAFELADKYKPRHNFNKADSTAGYGWLRLFLKRHPELSVRKSEGVSMSRANGMEKEEVSRYFKLLEEIFIQNQIIDKPGNLFNMDETGCQLNNKPEHVIAEKGSKNVATVTSAERGETVTVIACCNAEGSFLPPACVFKGKRKKTEWEEGMPPGSVVYMGEKSAYINKKFFFTWLKDHFVTRKPIGKVVLVLDGHSLSKRQLYQKMQFPVSNRLVFFRSTLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01253728;
- 90% Identity
- iTF_01253728;
- 80% Identity
- -