Cver001694.1
Basic Information
- Insect
- Cheilosia vernalis
- Gene Symbol
- -
- Assembly
- GCA_949126925.1
- Location
- OX421358.1:23055763-23063823[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-10 3.3e-07 30.7 0.1 7 43 222 261 220 263 0.81 2 2 7.9 5.9e+03 -2.1 0.0 13 23 340 351 334 352 0.66
Sequence Information
- Coding Sequence
- ATGAGTTACTTTGCAGCGTTTTCAAAGGATCAGTATAAGTATCTTCAGGGTATGCATGAAATAGCGGGACTTGTGGTTGTTGCATATGATCAAAGTGACCAGGAACCAAATTTCCGCCGCATCATGATGAAAGTCTATCCCGAAGCTATGTTCCAGACCGCGGTCTACGGAGACTGTGTGAATACTGGTGCTATAGTTAACATCGCGAAACTGCTGATTAAGGTACAACTTCCTTGCGAAACGGCGGTGTTGTCGTGGGGCCTTAGATTGCAGATGACAATGTTTTCACAGATTTTGAAGAACCAACCGAGTTTGGTATCGATGATGATACGCTATCTGTGCCGACAAAAGTCGAGGATTGGTTGCAAAATCATGGAAGCCACTCAACTGAAAGAACTATTAAATGAAACGTCTAGAGGAAAGGCGGTACTTGCCTATGCAACGGGAAACAGAAAACTTACTGCCTCTCAAAGCGATGACATAATTAATATTATTGTTGAAGACGTCATTAGTAATAACATTGCGCTTAAGCCAGAAAACTTTCTACAACTTACAAATGAAATTTGTTCAGTTTTTCCAATTGAAAGTGATGTAAagGGACTTTTAGACTATAAAATGCCACGAAAATATGCTCGCAAGACCTCcagggcaagttggaccagtgaagCTTTAGAAGAAGCAAGAAAAGGTGTTGAAGGTGGTATGTCCTTGAGAAAAGCTCAGAAAATGTATGGTGTTTCAGCTAGAACCATTACAAGACGCCTTAAGGAAGGAAACTTTCAAAAGAAATCTCTTGGACCGATGGGGGTATTGGGAGTAGAAGGCGAAAGAAAACTATCCGCACACATAAAAAAGTTAGCATCCTTAGGTTTCGCTGTAGATAAGGATGGTATTCGAAGTTTGGCTTTTGAATTGGCAGAAAAAATGGGTGTCAAACACAAATTTAATATTACGAGTAAAAAGGCGGGTTATGCTTGGTTGGCTTCGTTCTTAGAACGAAATAAAGACATATCTGTCCGACAAGCCGAAGGTCTCTCCCTGGCACGTGCACAGGGTATGAATCGGACAGCAGTAGATGAATTTTTTGATATTCTTGAAACGGTCTTGACTGAAAATAACCTTAAGGACAGGCCAGGTAATATTTTCAACATGGATGAAAGTGGCGTACAGCTAAACAATAAACCTGGAAAAGTCTTGGCAATGAAAGGGGCAAAAGATGTACATATCGTTACCTCTCGGGAGAAGGGAGAAAATGTAACAGTAATAGGATGTTGTAATGCTGAGGGAAATTTTCTGCCACCTGTTTTGATTATGAAAGGAGTTAACAAGAAGGCGGAATTTGTGGATGGGCTGCCGAGTGGATCCGATGTCTATATGAATCGAAAATCATCGTACATAAATGCTGAGTTGTTTTACAAGTGGCTTAAAGATCACTTCACTCCCCGAAAACCGTTAGGTAAAACGCTTTTAATATTAGATGGCCATACCTCCCACAGCAACGCTTTTGAGATGCTTGAGTTCGCTGAAAAAAatgatattattatattatgctTACCAAGCCATACCACCCAAGCTTTGCAGCCCCTGGACAGAAGTTTCTTCAAGCCATTGAAAgcattttttcataatgaagcTAAAGTTTGGATGAACCACCATAAAAATAGGACTATCACTCGTTATCAGGCCGGACATTTGATTGGCAATGCGTGGCAGAAAGCAGCTTCTGTTGGCAATGGAGCATCTGGATTTAGAGCTACGGGAATCTTCCCTTTTAATCCTCAAGCTATTCCAGaacacttttttaaaatatcggatttttcttttccaattaATCAACCCACTACTGATTCTGTTAATGCACAACTTTCAAGTCCTGAACGAAATTTAGCTCCAGCTATTCCGATCAGTATTGATCAGCAACAAGCTTGTACTCACACCGAAAATGAAACACATTCCTCTTCTTGCTTTACGAAACCAACACCAACAAAGCTACTTCAAGAAATTTCACCATTACCCAAAATTCCGATACCCTTTAACACTAGGAGAAAGCAGTTTGCAGAGGTTTTAACATCAATtgcaacaataaataaaaagaaatccaTGAAGACATCGAGGAGTCTTACTAAGCCTCAAAAATAg
- Protein Sequence
- MSYFAAFSKDQYKYLQGMHEIAGLVVVAYDQSDQEPNFRRIMMKVYPEAMFQTAVYGDCVNTGAIVNIAKLLIKVQLPCETAVLSWGLRLQMTMFSQILKNQPSLVSMMIRYLCRQKSRIGCKIMEATQLKELLNETSRGKAVLAYATGNRKLTASQSDDIINIIVEDVISNNIALKPENFLQLTNEICSVFPIESDVKGLLDYKMPRKYARKTSRASWTSEALEEARKGVEGGMSLRKAQKMYGVSARTITRRLKEGNFQKKSLGPMGVLGVEGERKLSAHIKKLASLGFAVDKDGIRSLAFELAEKMGVKHKFNITSKKAGYAWLASFLERNKDISVRQAEGLSLARAQGMNRTAVDEFFDILETVLTENNLKDRPGNIFNMDESGVQLNNKPGKVLAMKGAKDVHIVTSREKGENVTVIGCCNAEGNFLPPVLIMKGVNKKAEFVDGLPSGSDVYMNRKSSYINAELFYKWLKDHFTPRKPLGKTLLILDGHTSHSNAFEMLEFAEKNDIIILCLPSHTTQALQPLDRSFFKPLKAFFHNEAKVWMNHHKNRTITRYQAGHLIGNAWQKAASVGNGASGFRATGIFPFNPQAIPEHFFKISDFSFPINQPTTDSVNAQLSSPERNLAPAIPISIDQQQACTHTENETHSSSCFTKPTPTKLLQEISPLPKIPIPFNTRRKQFAEVLTSIATINKKKSMKTSRSLTKPQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -