Cver010672.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cheilosia vernalis
Gene Symbol
bab1
Assembly
GCA_949126925.1
Location
OX421359.1:1003610-1014300[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.7e-17 6.5e-14 52.2 0.0 1 43 444 487 444 489 0.95

Sequence Information

Coding Sequence
ATGAAACGTTGGAAAGCCATATTGGAGGAATACAACTACGAGCTCCAATATAAGCCCGGAAGAACCAATGTAGTTGCAGACTCACTTTCCAGACTACCATTTTCAACAAACGTAAATTCATTAACTATGACTCAACATAGTGATGATAGTTCATCTGATAACCTAATTCCAACTATCGAAACTCCTGTTAACGTCTTTCGCAACCAGCtcatatttaaattagataGCGAAAACAGTTATCAAATTCAAACCCCTTTTCCTAATACCAAAAGACACATTTTCACTCAAGAACATTTTAACGAAACCGATATAATTAACATATTTAAAAGGTATCTCAACCCTAGCATAGTTAACGGACTTTCTGCACCCGAAGGAGTTATGGGCAAAATACAAGAGATATATCCCGTCCATTTCAGAAACTACAAAATAAGGTACACCCAAACCGTTGTCGAAGATGTAGCCAACGAAGACCGACAAGAAGAAATAATACTTATAGAACATAAAAGAGCTCACCGAAACGCTTACGAAAACCGATTGCAAATACTGCAAAAATACTATTTCCCAAAGATGAATTCAAAAATCCAAAACCTTGTTAAACGCTGCACAGtgtgcaaagaaaacaaatacgaaCGCCATCCCAACAACCAATTTATAGAACCAACTCCTATACCAAACTATCCTGGTCATACAGTACATATCGACATATTCTCGACAGAAAAATTTCTAGTACTAACAGCAATCGACAAATTTACGAAATTCGCTCAGGCCAAACTGATCGATTCTCGATCAACTGAACACATAAAACGACCCCTTCAAGACATCCTTTTCTACTTCTGCATTCCAGAAAACGTGGTGATCGACAACGAAAAAGCCCTTAATTCGGTTTCCATAACTTCTATGCTCGAGGATGACCTTAAGATTAAAGTCTTCACGACACCCCCTTACAAAAGCGAGGTCAACGGACAAATAGAACGTTTTCACTCAACGTTGTCCGAGATTATGCGATGCCTTAAGGCAGACGGACCTCCTCGTTCTTTTCAAGATTTGCTAAACCGAGCAGTCAATGAATATAATTTTACCATCCATTCCTCAACAGGAAAAAAGCCAGTCGAACTATATTACGGTCGTATTCCAAGAGTAAATCCAGAACAATTCGAACAGGCCAAACTGCTGGAGAACTCGCATACATGGATGGGAGCCGCCTCGACATCGTCTATTGCAGATAGCTACCAGTACCAACTGCAGTCTATGTGGCAAAAATGCTGGAATACAAATCAAAACCTTATGCATCATCTGCGGTTCCGCGAACGTGGTCCACTGAAATCCTGGCGGCCCGAAACAATGGCTGAAGCCATTTTCAGTGTACTGAAAGAAGGCCTCTCCCTATCGCAGGCTGCCCGCAAATATGACATTCCATATCCAACATTCGTTCTGTACGCCAACAGAGTTCACAACATGCTAGGTCCATCGATAGACGGCGGCACTGATCTAAGGCCAAAAGGTCGAGGCCGTCCGCAAAGAATTCTGCTGGGCATTTGGCCCGATGAGCACATTAAGGGTGTTATAAAAACGGTAGTCTTTCGGGACGCCAAGGAGTTGAAAGATGACGGTATTCATTTACATTATGGTCGACATTCGCCTGTATTTCCATTCCAAGACACCGCTCTCAACTATCCAGGTGCACCGGGATGTCCTAACGGTCTGCCTACGGTTCCTGGTGGACCCACCGTAGGCGATTCAATGTCTCAAGAGGCTACTGCTGCCGCTGTAGCCGGTGTAGCACATGCTCTCCGCCAACAGATGCAAATGGCCGCCGCTCAACAACACTCTCATCAACAAACACAacatcagcatcatcatccGGAATCTTCTTCCAATCTTTTCAATCTGCCAGCTCATATGTCGCCACATGGCACCCCTGGTGGTATACCGTTACCGAAGCAAAACTCTCCCATATCCAGCGGAACCGGACAAAACCCCATGCAAAGGCACTCTTCGCCGTCCGCATCTACAATGCCTGGTCTTCCTAATCAATCGGTGCTGAATTTAGCCGGTATATCAGGCTTGCATATGGTTCCAGGAATGGGATCAAATATGACATCAACTGGTGGTGCGTCATCAGCTTCCACATCAACGGTTCACAGAGGAGACGGCCAATCTCAATCAAGCCATCAGTCCAACATCTCGCCTGGCCATATTCCATACAGCAGCAGTAGTTCTGTTCATGTGACAGCGCCACCGTCCAGCAATAGCAATACGCGGCTACACCCAACGTCACCCTCCGATTCAGCACACGATCTCCGGATGAATAGTCCTGAGGAGAGTTTACTCAACTCGCCTCTTCAAATGTCGCTTGAACCGGCAGTTAATTTAGCTGTAGGTGTTAGTGGTATGGCCTACAAGCCATCCCGAGGCTATTCCTCTCCTCGGCCAGAGCATCTCTTCCAGGAGGATATTGCAGAGCTCGTGGGTTCTGTTAGTGATAGATCCCTAGCATGTCCTTCCAACTTAGACAACTACAAAGATCCGTCAACAAATATAAAACTGGAGCCGATCACAGAATGTCGGAGCGAATAA
Protein Sequence
MKRWKAILEEYNYELQYKPGRTNVVADSLSRLPFSTNVNSLTMTQHSDDSSSDNLIPTIETPVNVFRNQLIFKLDSENSYQIQTPFPNTKRHIFTQEHFNETDIINIFKRYLNPSIVNGLSAPEGVMGKIQEIYPVHFRNYKIRYTQTVVEDVANEDRQEEIILIEHKRAHRNAYENRLQILQKYYFPKMNSKIQNLVKRCTVCKENKYERHPNNQFIEPTPIPNYPGHTVHIDIFSTEKFLVLTAIDKFTKFAQAKLIDSRSTEHIKRPLQDILFYFCIPENVVIDNEKALNSVSITSMLEDDLKIKVFTTPPYKSEVNGQIERFHSTLSEIMRCLKADGPPRSFQDLLNRAVNEYNFTIHSSTGKKPVELYYGRIPRVNPEQFEQAKLLENSHTWMGAASTSSIADSYQYQLQSMWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGTDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKELKDDGIHLHYGRHSPVFPFQDTALNYPGAPGCPNGLPTVPGGPTVGDSMSQEATAAAVAGVAHALRQQMQMAAAQQHSHQQTQHQHHHPESSSNLFNLPAHMSPHGTPGGIPLPKQNSPISSGTGQNPMQRHSSPSASTMPGLPNQSVLNLAGISGLHMVPGMGSNMTSTGGASSASTSTVHRGDGQSQSSHQSNISPGHIPYSSSSSVHVTAPPSSNSNTRLHPTSPSDSAHDLRMNSPEESLLNSPLQMSLEPAVNLAVGVSGMAYKPSRGYSSPRPEHLFQEDIAELVGSVSDRSLACPSNLDNYKDPSTNIKLEPITECRSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-