Cvar014733.1
Basic Information
- Insect
- Cheilosia variabilis
- Gene Symbol
- -
- Assembly
- GCA_951230905.1
- Location
- OX579677.1:4515581-4520150[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0049 0.69 11.3 0.2 1 23 164 186 164 186 0.97 2 10 0.00014 0.019 16.2 1.7 1 23 391 414 391 414 0.95 3 10 8.6e-05 0.012 16.8 2.3 1 23 426 448 426 448 0.97 4 10 0.0026 0.37 12.2 0.1 1 20 510 529 510 530 0.97 5 10 2.7e-05 0.0039 18.4 0.2 1 20 575 594 575 595 0.97 6 10 0.12 17 7.0 1.9 2 23 630 651 629 651 0.96 7 10 0.21 30 6.1 6.3 2 23 664 686 663 686 0.95 8 10 4.7e-06 0.00066 20.8 3.8 1 23 772 795 772 795 0.98 9 10 0.0014 0.19 13.0 1.7 1 23 804 826 804 826 0.98 10 10 0.024 3.4 9.1 0.4 1 23 839 862 839 862 0.92
Sequence Information
- Coding Sequence
- ATGGCCCTTCCTTCGCAATTCCGTGATATATGCCGAGCTTGTATGAAAAGGCGCGACGATATGCGAATGTTCTTCTTTTCGCGAATTAACTCGGTCGATGTTGCCTCAATGCTGACAAAAATTGCTTTGCTGCCTGTGGAACCGTCGGACAGCTTGCCAAAAGtcctgtgcagtgtatgcataaGGAAGCTAAATGACGCATACAACTTTCAGCAGATGTGTATCAAGTCGCACATAACATTCAATGACATGCTACAGACACAGCAATGGCCTGCGGACATAATTAAGAAGGAGCCGTGTGAGCTCACAATCAGTGCAGTTGAATCTCAAGCCGATATTGATGAAGATAAGGCAGCTAATTTGGCAGCAGAATCTGCGGATGGAACAGTATTTCTGGAACCGAAATTAGAACCGGACAGCGGGGACGAGTCTCAAGGGGAATCGATCAAAACCGAAAAGGGTACCAAGACTGGTGTGAAGTCTAATAAGTTCACATGCAACTTTTGCCGCGATGCGTTTGAGACATGGAACGAACTGACAGAACACATTGCCCTGCATAAAACAAAGAGCAGTGCTCTAGATGATAGCAGCTGTGAAGTGCCAGAGAAGAAACGGAAAATCTCGCAAGCGAGCACCTCCAAGGAGGTGTTCCCCAGTGAATTAGGCTTCAGAATTGAGAACTTTGCTGACGACGGGCGCAGTGACAACAACTCCCTTGATGGCCTGCCCCTGGAGCCGATATGCAATGTGCAGGTCAAGGAGGAGGTAAATTCCGAACAGAGTGCCTCGGAATACGAAGAGGAGGACAATGAAGACTCAGTCAACAACAAATACGCTCCCCACGGAGAGAATGAAGGCGATGACGACGATGAATATCAACTGCCCGTCAAAACAGAAAGACCAGAAGGCGAGGGAGGGCGCAACTTCGTGAATTCCAAGAGTCCCGTCTGTGAAATGTGCGGATTCAAGCCAAAAATCCCAGCGCTGATGCACGCCCATGTACGCAACCGCCATCCCGACAATTACATGGAATACGTGGACAACTTAAAGACTTCTGGAGAATGGGTTGTCAAATGTAGAATCTGTGACGTTTATCTATTCAGCAGCACCATCTATGGACAGCATTTGAAGTACACCCATTCGCAAATTGTGAACGACTGCACGGGATATTTCGAGTGCAACATGTGCGATCAGACCTTCAGCAGTAAAAATGATTTCTTCCTGCACAAGAACCAGGCCCACAATTTGAGACGCATCAACAAAGCAAAGCAGATCTTTATGTGCCTGCTGTGTGACAAGCAGTTTGGACGGTATTCGAACCTGCAGCATCATGAGGAAACGCACGAGGCCAACGGCACTGCTGCTACAACTCCGCGCAACAGTAGTGCGATCGCTGCCAACAGCGGAATAAGCGGAATGCTCAGAAAGAGGCGAATTGAACCACCAGTCGATGTTCCAGCGACGCCAGTCATTCTCACGTTGAAAACGTCGCCCAAGAAGACCGAAGTTATTATCTCGGGGGGGAAATTCCAATGCCAAGCGTGCGACAAATCGTTTGGCAACGAATTCGGCCTGCGAGTGCACATCGGTTGCGTTCACAAGGGAATGGAGAAGCTGCCGCCGAAAACCGAGGCCAAAATAGAACACAAGCCCGAGCCCAAACCGAGCACCATCATCACATATACTCCTCCcagcatcaacaacatCACGCCCAGTGGTAAATTCCGATGTCACGGATGCGATAAATCATTTGCCACCGAATTCGGTCTGCGAGTGCACATCGGCTGCGTGCACAAGGGAATGGAGAAGCTGCCTCCGAAAGTGGGCGGAAGCAAACCAACTGCTGCCATTGCTCAAAAGCCTCCGCCACCACCGGTAACTGACAGTTACTGCGAGCTGTGCGAGAAACAGTTTGACTCGATAGCGGATTGTCGCTCCCACATGCAGAAGCACTACGAAGTTGCTTACACATACCGAGAACGTACAATTCGCTGTAAGGAGTGCAAGCACGAGTCCAACACTCGTACGGAATTCAAGCATCACATCAAACAAAGGCACAAGGAAATTTACAGGAAACGCATTGCGGGCCTGGCAACAATGGATCCGAAATTTGAAGCGTGTAACTTGTGCTTTATGCCGGTTTTCTATACGAAAACTGTCCGACACATCAACTCACATTACATGAGAGAGAACGAGAGGAGAGATGATTCTGATGAACAACTCGCACCAACCCCAACAAAATCTCCAAGCATCATCTCAAAACTGATGAAGATCGTGCCCGCTCTACAGCCTCCAAACGGCAAGACTATCAAACACAAGTGCAAAATATGCTCCAAGTTCTATCCGGACAAGTCATCGCTCATGAAGCACATGCTGACGTTTCACAAGAAAGTTGACGGACGGAAGCACTTCAACTGCAAAATATGTTTCCGTTCGATCACTGGCTTGCAAAACTTCAACTCTCACATGCGGTCACACCGGGGTGACTATCCCAAAACCAAACCCAAGCACAACCACGCTTGCCACTTGTGCTCGGGAGTCTTTGGCGAAAGGGAGGACCTTCAAAAGCATCTAGTTGTGGCGCATAGTTTTAATCCAATGATATTTTATCAAAAGTGA
- Protein Sequence
- MALPSQFRDICRACMKRRDDMRMFFFSRINSVDVASMLTKIALLPVEPSDSLPKVLCSVCIRKLNDAYNFQQMCIKSHITFNDMLQTQQWPADIIKKEPCELTISAVESQADIDEDKAANLAAESADGTVFLEPKLEPDSGDESQGESIKTEKGTKTGVKSNKFTCNFCRDAFETWNELTEHIALHKTKSSALDDSSCEVPEKKRKISQASTSKEVFPSELGFRIENFADDGRSDNNSLDGLPLEPICNVQVKEEVNSEQSASEYEEEDNEDSVNNKYAPHGENEGDDDDEYQLPVKTERPEGEGGRNFVNSKSPVCEMCGFKPKIPALMHAHVRNRHPDNYMEYVDNLKTSGEWVVKCRICDVYLFSSTIYGQHLKYTHSQIVNDCTGYFECNMCDQTFSSKNDFFLHKNQAHNLRRINKAKQIFMCLLCDKQFGRYSNLQHHEETHEANGTAATTPRNSSAIAANSGISGMLRKRRIEPPVDVPATPVILTLKTSPKKTEVIISGGKFQCQACDKSFGNEFGLRVHIGCVHKGMEKLPPKTEAKIEHKPEPKPSTIITYTPPSINNITPSGKFRCHGCDKSFATEFGLRVHIGCVHKGMEKLPPKVGGSKPTAAIAQKPPPPPVTDSYCELCEKQFDSIADCRSHMQKHYEVAYTYRERTIRCKECKHESNTRTEFKHHIKQRHKEIYRKRIAGLATMDPKFEACNLCFMPVFYTKTVRHINSHYMRENERRDDSDEQLAPTPTKSPSIISKLMKIVPALQPPNGKTIKHKCKICSKFYPDKSSLMKHMLTFHKKVDGRKHFNCKICFRSITGLQNFNSHMRSHRGDYPKTKPKHNHACHLCSGVFGEREDLQKHLVVAHSFNPMIFYQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00312122;
- 90% Identity
- iTF_00313796;
- 80% Identity
- -