Basic Information

Insect: Cheilosia variabilis
Gene Symbol: -
Assembly: GCA_951230905.1
Location: OX579677.1:29211706-29220847[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0091 1.3 10.5 1.4 3 21 1022 1040 1021 1041 0.94

2 8 0.062 8.8 7.8 0.9 1 23 1048 1070 1048 1070 0.97

3 8 0.00048 0.067 14.5 2.2 2 23 1075 1096 1074 1096 0.96

4 8 7.9e-07 0.00011 23.2 2.3 1 23 1102 1124 1102 1124 0.99

5 8 7.9e-06 0.0011 20.1 0.2 1 23 1130 1152 1130 1152 0.98

6 8 0.0013 0.18 13.1 1.7 1 23 1158 1180 1158 1180 0.98

7 8 0.00051 0.072 14.4 2.3 1 23 1186 1208 1186 1208 0.95

8 8 9.8e-05 0.014 16.6 0.7 1 23 1214 1236 1214 1236 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0091	1.3	10.5	1.4	3	21	1022	1040	1021	1041	0.94
2	8	0.062	8.8	7.8	0.9	1	23	1048	1070	1048	1070	0.97
3	8	0.00048	0.067	14.5	2.2	2	23	1075	1096	1074	1096	0.96
4	8	7.9e-07	0.00011	23.2	2.3	1	23	1102	1124	1102	1124	0.99
5	8	7.9e-06	0.0011	20.1	0.2	1	23	1130	1152	1130	1152	0.98
6	8	0.0013	0.18	13.1	1.7	1	23	1158	1180	1158	1180	0.98
7	8	0.00051	0.072	14.4	2.3	1	23	1186	1208	1186	1208	0.95
8	8	9.8e-05	0.014	16.6	0.7	1	23	1214	1236	1214	1236	0.98

Sequence Information

Coding Sequence: ATGTCTAGTACTGCCATATCAACTTTCATGGCATACGATCCGCCAGAAACCAACACCCATTGTGGTCTTGTTTTCTGTTctcataattttgaaatttttttaataaactgttCAATCTGTTCGCTGGAATTTAACTTACTTAGTTGCAATCTATTCATCAAACACATCAAGGAATGTTTATCTGAGCGATTTTCCGATCAGCCTCAAGCTAAGGAAGTTTCTAACAATGCCATTCATAGCTCGCTTAAAGGTGCTTTAGAAAGCAACATAGCAGGAGATGAAGGTGCTCAAGAAACTGATCAACATTTGTTGGACCCACTGGCTTCCTTAAAACTGGAATTTCCAAAGGATATCGAAGAGgcAACATTCTTGGACAATGAAAACACTTTCGAAGAAGATGTGATATGCGCCTCTGACTATCAAGACGAGGATGATTTGACCATAAACAAAATAGCCCACCGTAAGGTGATAGAAGGGATAATTGACGAATATAAAAACCATCCAACTTTGTGGGATACAAATCTGATAGAAACATCAACGCTATCAGACATAAATTGTCATTACAAAGAGattcaaaaaaacattaactcCAAATTCAAGACGAACTTCAAAGTTTCAGAGCTGCGTAGTCAAATTCTGAATTTGAAAAGTGAATATAGAAGAGTACTTAAAAAACACGATAACTTCGCAAATAATGAAATCGGTGGGAGTTCGCCATTTAAACCACAGTTGTGGTACTTTGATCAAATTTCTTTTATTGGGACAACAGATAAAGATGACCAGGTATATGACTGTGACTCAGCTTTAGGTCGACTTCCAAAAGTAGAAGTTTCAGATGAAGAAGAGTCATCTGATTCATCGCTTCAACAAACTCCAAGTAAGCCAAAGAAAACGCCACGACCACTACCAAATTCCAAGATATTGAGTGAACCGAATATTATATCGGATATAATCGGTCAATATAAGAAATATCCTTTTTTGTGGGATCAAACTGCTTCCCTCTATAGTGACAAATATGCACGCAAGGACGCATTTCGTAAAATAGCTACGTGtattaacaataaatttaacaaaaacgttacggataAAGAAATAAGGCGACAGATAGTCAACTTGCGGAGTGGATACAGGCGGGCTCAAAGAAAGAAGCATAGGGCAAACTATCGCATAAGTTTGTGGTATTATGATGAGCTCTCCTTCATTGACAAGAGATCTGATCAGACCGAACAGAATTGCCAGATAGCAGAAGAAGATTCAATAGATGACAAAGCAGAACTTAAAGAATTTTCAGGCGTAGATGAGAACGAAGAATCCGACAGTTATAACCCATGCGAAATTGACAATGATCATGATAATGACGAGGATACTGGTGATGATAATATTGACGATGAAAGTGATATTGAAGGAGAAAGTTTATCTTGCCGTCGAAAGAgggataaaaaaataatattaagtcTCATCGAAGAATACAAACAACATCCTTGTTTGTGGAATAATTACTTGTACAAAACTAGCAGTCGCTTTAAACGCCACGACGCGAATAAAGCAATTACAAAAGCTATTaatggtaaatttaaaaaaaccttcACTGACACAGAAATTCGAAATAAACTTGTTCAGCTAAGAAGCGGCTACAGACGAGTTCTGCGAAAAAAAGAGGCATTTGAGAAGAAGCAcataaatgcaaaaagaaaattccacTCACAGTTGTGGTACTTCGATAAGATGTCATTCATTGGAGCGACCGATAGGGACTTTTCAGTGAGGCAtcgaaaaaaaacgaaagccaAAACAGAAGACCTTCCGAAGGAAGAGCATTTAGTGCAGAAAGAAGATATCCATACATTGTCCGTTGAAAGCGACGAATACTCCAACAGAGGTATAGAGGATACTTTACAAGAAAACGATTTAGTGGAACAATCTGATGAAGACGAACAAGAACTAAGCGAACGTGACTCTTcatcaaatcaatttaataaatcgattacTAAAAACAGAGAACTTTTAACGGGAATTATAGAGGAGTATAAGAAATTACCCTGCCTATGGGCAGTACAATACTACAGCAATGACAATCTCAGCCGACGAAATTCATTTCGAAAAATGGCTAAGATCATAAATGCCAAGTTCAATACCCAATTTACATTCAAGGATCTAAGTCAAGAGATAAGTAAGTTGCGTTGTACGTATAAACGAATGTTGCGCAGGAAACAGGAAAGTGCGGATGGGGAATTCAAAACGAAAATGTGGTATGCCGATATGTTGTCATTCATCGAAAAAAGTGATGAGATTAACGAAGATAGCCAATTGGATACCATGCCGCCAAATGACAATTTGGAATGCAAAGAGatgGATCAAACAAAAAGTaacgAACATATCGCCGAAATCATAGAGCTTTATAAATCTTCGCCTGTCTTGTGGGACCCCAAACATCAGCAGCATATGCAATGGAGTGCGCGAAGGAAAGCCATAGAGAAAATAATTGAAACGTTAAACCAAGATCATGATTACAAATTAACAGTTGAAGAACTGCGATATCAAATACGCTTCCTAAGGGAATCATACTTTCGTGCCGTAAGGGAAGAGATTAGTGCTAAGCAAGGCGATCTGTTCAAATGTGCACCGAAGCCGTTTTTTTACGACAAAATGTCATTCTTGGAACCGTTTGCTGAAAAAAATCGTTCGAATATTCCAAAACTGGACAACGCTGTCCAAGCTGTTTTCGCAGAAGATTTCACTTTTCTAACCGAAAACAAACCCCTTATGATAGATTTCATAGAACTTTACAAGTCACACGATTGCTTATGGAATCAAGAACATAAAGATCGGAATAATCCAGCCGCTCATTCCGATGCCTACGATAagattataaatatgtttttgcaGAACGAtatcatttttacaaaagagaaaGTCATGTCGGCCATTAGTTTCCTCTACTCAATTGTTTCGAATGCACAGAAGACTCCTGAATTAAACGATCCTAAAGAAAATGAGCAGAAAATTTGGTTTTATGAACACCTTCAATTTCTGCAAAATATTACTGGAGTTAAAGACAATTATTGCGCTCACTGTGGCCAATATTTCTGCACATTAGCCGCATATAAAAAACACCAAATGGAAATCAATAGTGAATATCCCTACAAGTGTTTCGTATGCAATGCAGGATTTATTTCCCGTTCGAAATACGCGTTTCACCAAATAACACATAAAGAACCACAAAAATGTGAACAGTGTGGCTTTCAAACATTCGATAAGTACAATTTTAATATCCACATGCGCCGGCACAAAGGCATCCATTCATTTCGGTGTGAACACTGTGAAAAGGGTTTTGTTACCTCGACAGAACTTAATCGACACCTGCGGATGCATACTGATGCGAGACCCTTTATTTGCGATGTTTGTGGAAAACCATTGCCATCGAAATCCGACTTTGAACAACATATGAAACGGCATCGCAATCAACGGGATCACAAATGTGAGTTTTGTGGAAGTGCTTTTTTCACCCTGACAACTCTGCGAGATCACATGGCCTCCCATTCATCTGAACGACAACACGTGTGTGAAGTATGTGGTGCGGCATTCAAGCGTAAAAAGACACTCCATCAGCACAAGGCCTTGCATTTAGAGCGAAAGAAACACGAATGTAAAATTTGTGGGAAGTTGTTTGCTCAACAAGCTGGAGTGTACTCTCACATGAAGTCGCACGAGGTCATAGCAAGTTAA
Protein Sequence: MSSTAISTFMAYDPPETNTHCGLVFCSHNFEIFLINCSICSLEFNLLSCNLFIKHIKECLSERFSDQPQAKEVSNNAIHSSLKGALESNIAGDEGAQETDQHLLDPLASLKLEFPKDIEEATFLDNENTFEEDVICASDYQDEDDLTINKIAHRKVIEGIIDEYKNHPTLWDTNLIETSTLSDINCHYKEIQKNINSKFKTNFKVSELRSQILNLKSEYRRVLKKHDNFANNEIGGSSPFKPQLWYFDQISFIGTTDKDDQVYDCDSALGRLPKVEVSDEEESSDSSLQQTPSKPKKTPRPLPNSKILSEPNIISDIIGQYKKYPFLWDQTASLYSDKYARKDAFRKIATCINNKFNKNVTDKEIRRQIVNLRSGYRRAQRKKHRANYRISLWYYDELSFIDKRSDQTEQNCQIAEEDSIDDKAELKEFSGVDENEESDSYNPCEIDNDHDNDEDTGDDNIDDESDIEGESLSCRRKRDKKIILSLIEEYKQHPCLWNNYLYKTSSRFKRHDANKAITKAINGKFKKTFTDTEIRNKLVQLRSGYRRVLRKKEAFEKKHINAKRKFHSQLWYFDKMSFIGATDRDFSVRHRKKTKAKTEDLPKEEHLVQKEDIHTLSVESDEYSNRGIEDTLQENDLVEQSDEDEQELSERDSSSNQFNKSITKNRELLTGIIEEYKKLPCLWAVQYYSNDNLSRRNSFRKMAKIINAKFNTQFTFKDLSQEISKLRCTYKRMLRRKQESADGEFKTKMWYADMLSFIEKSDEINEDSQLDTMPPNDNLECKEMDQTKSNEHIAEIIELYKSSPVLWDPKHQQHMQWSARRKAIEKIIETLNQDHDYKLTVEELRYQIRFLRESYFRAVREEISAKQGDLFKCAPKPFFYDKMSFLEPFAEKNRSNIPKLDNAVQAVFAEDFTFLTENKPLMIDFIELYKSHDCLWNQEHKDRNNPAAHSDAYDKIINMFLQNDIIFTKEKVMSAISFLYSIVSNAQKTPELNDPKENEQKIWFYEHLQFLQNITGVKDNYCAHCGQYFCTLAAYKKHQMEINSEYPYKCFVCNAGFISRSKYAFHQITHKEPQKCEQCGFQTFDKYNFNIHMRRHKGIHSFRCEHCEKGFVTSTELNRHLRMHTDARPFICDVCGKPLPSKSDFEQHMKRHRNQRDHKCEFCGSAFFTLTTLRDHMASHSSERQHVCEVCGAAFKRKKTLHQHKALHLERKKHECKICGKLFAQQAGVYSHMKSHEVIAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00312953;
90% Identity: iTF_00311318;
80% Identity: -