Cvar023776.1
Basic Information
- Insect
- Cheilosia variabilis
- Gene Symbol
- grau
- Assembly
- GCA_951230905.1
- Location
- OX579679.1:24250613-24252878[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.56 78 4.8 1.6 2 19 232 249 231 250 0.95 2 10 1.8 2.6e+02 3.2 0.4 6 23 263 280 263 280 0.97 3 10 2.2e-06 0.00032 21.8 4.6 1 23 286 309 286 309 0.97 4 10 4.7e-05 0.0066 17.7 1.4 1 23 317 339 317 339 0.98 5 10 1.1e-05 0.0016 19.6 0.1 1 23 347 370 347 370 0.96 6 10 0.015 2.2 9.7 0.9 2 23 377 398 376 398 0.96 7 10 0.0065 0.91 10.9 2.8 2 23 407 428 406 428 0.97 8 10 3.1e-05 0.0043 18.2 0.5 1 23 435 458 435 458 0.95 9 10 1.1e-05 0.0016 19.6 0.4 1 23 464 486 464 486 0.98 10 10 1.6e-05 0.0023 19.1 4.9 1 23 492 515 492 515 0.97
Sequence Information
- Coding Sequence
- ATGATTTGCAGACTTTGTTTAAAGGACATTCTTGAAGTAATAAACATTTTCGACGAAATTGGTACAGAACTCAATGTCTCTAACATATTAACAAAGTACTTTTGGTTTGAGCCAAAAATTGATGATCCCATATCGACTGCTATATGCAACGCTTGCTGGGTAAGTGTAACCAATTTCCATGAATACTACCTATCGGTGGAGGAAGCTCATCGGCTGCTTTCTGAACGGTTTTTTGTGAAAACAACCGGAGATGTTGCCGCAAAAGATTACAGGTCTGAAATGAAGGAAGAAGACAACAAAAACGATGATTTGGGTTGGGATATGCCAGGGGTAACATACACTTTTCAGCTTGAAGATGAAGAAGAGAAACCAGCAGACATTAATAGCGATGGTTTTATAATGGAAGAGTTGACAGATAACGCAAGTGAAGATATTAAAGACGAAGACATCAAACTCCAAACCGAAGAAATTTCTGAGCCGGAAAACAGCAGCCGTTGTTTATCTCTTCGGTCAAGAACTTTAAGCAGGATAACACCGTCACCCGGAACCGAAACTAGtcccaaaagaagaaaagttGGAAAAGTGAAAACAGAACTTAAGTCTCCCACTGAAATAGGTCTCGACAAAAAGGTATCCAAATACAATTTGCGAGCAAAGGAATACGACCTTCTGATAGCCAACCACATGAAGCTAAGATGTGAGATTTGCCACATTGAGCTGTGTGACTTTACTTCACTGCGTCAGCACTTTTGGCTCGCACACGGACAGAAGGGTTACGTTATTTGTTGCAATAAGAAGCTCTTCAAGCGAGTTCTTTTGGTGGATCATATTAACAAGCATTTAGATCCAGAGTACTTTAAATGCCATGATTGCAACAAATCTTTTGCCGATAAGCAGTGTTTGAAGAACCACATCCTGATCATGCATCAGGCTGATGAAGAGAAACCGTTTCAGTGTGTTCACTGCCCCAAACGCTTCATAAAACAGTATCTTCTCGATCAGCATCAAGCGATACACGTGCCCATGGAGGAGAGAAAGTTCCCTTGTGATATCTGCCCCAAGGTCTTTCCCAGCGAGAACACTCTAAATACCCACCGCAAAAACGCCCATACGCATGAATACGGTAAAATGTGTCATATATGCGCAAAAGTAATTCGTGGCAAGGCAATGTTCGAAAAGCATCAAATGGAGCACGCCGGAGTCAAACAGCCTGAAGTACAATGTGAAAAATGTGGATCGTGGCTTAAAAATAAGCACAGCTTACAGAAGCATCTGCGTCGACACAACGAAGAAGGCAAAGTGCACTCGTGCAATATTTGCGGAAAAGTGGCGCCCAATCAAAGCGCTCTGCGAAGTCATTTTCGTTATGTACATGCCTCAGAGCGCTCATATGCTTGCGGCATTTGTAAAAAGGCATTCAAAAAGGCCCTCAGCCTAAAGGAGCACATGACAACGCACACAGGAGAGGTTCTGTACTCATGCCCGCACTGTCCAAAAACATTCAATTCGAATGCAAATATGCATTCGCAcagaaagaaaatgcatccCAACGAGTGGGAGgctaacagaaaacatcgaaaggGTAAAATTGCCAGTGGTTCTTCGGCACGAAAACGAAGAATCGACAGCGGCAATGAGATGACCGAAGATGGTTACGATGAGCCAGAGGAGGATGACGAGCTTGAAGACGCAAATGAACTGTCAGTAGATGATAATGAAGTTCCAGACAGTGAAACAGCTGGCGAAGTTTGA
- Protein Sequence
- MICRLCLKDILEVINIFDEIGTELNVSNILTKYFWFEPKIDDPISTAICNACWVSVTNFHEYYLSVEEAHRLLSERFFVKTTGDVAAKDYRSEMKEEDNKNDDLGWDMPGVTYTFQLEDEEEKPADINSDGFIMEELTDNASEDIKDEDIKLQTEEISEPENSSRCLSLRSRTLSRITPSPGTETSPKRRKVGKVKTELKSPTEIGLDKKVSKYNLRAKEYDLLIANHMKLRCEICHIELCDFTSLRQHFWLAHGQKGYVICCNKKLFKRVLLVDHINKHLDPEYFKCHDCNKSFADKQCLKNHILIMHQADEEKPFQCVHCPKRFIKQYLLDQHQAIHVPMEERKFPCDICPKVFPSENTLNTHRKNAHTHEYGKMCHICAKVIRGKAMFEKHQMEHAGVKQPEVQCEKCGSWLKNKHSLQKHLRRHNEEGKVHSCNICGKVAPNQSALRSHFRYVHASERSYACGICKKAFKKALSLKEHMTTHTGEVLYSCPHCPKTFNSNANMHSHRKKMHPNEWEANRKHRKGKIASGSSARKRRIDSGNEMTEDGYDEPEEDDELEDANELSVDDNEVPDSETAGEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00312896; iTF_00316243; iTF_00313727; iTF_00311279; iTF_00314604; iTF_00312064;
- 90% Identity
- iTF_00316243;
- 80% Identity
- -