Cvar002122.2
Basic Information
- Insect
- Cheilosia variabilis
- Gene Symbol
- clz9
- Assembly
- GCA_951230905.1
- Location
- OX579676.1:41345305-41347103[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.5e-10 3.4e-07 30.7 0.0 3 39 18 55 16 59 0.89 2 2 9.8 5.2e+03 -1.9 0.0 23 32 530 539 525 541 0.81
Sequence Information
- Coding Sequence
- ATGACTCCGGCAAATAAGAAGCATGCTAAGCGCGCTATTCTATATAAAGGAACAGATTTAGAACAAGCCCTATTTGAAATCCGTAAAAATAAACTGCCAATCAGGGCGGCGGCAAGAAGATTTGGGATTCCAAGGACGACTCTTCAGGACCGAATTCACAAAAGAACCGCAGATAACCTTGGGAAATTTGGACCCTGCCCTGTACTCTCTGCAGAAGAAGAAAATAGGCTTAAAATCTGGATTATAAATCTAGCAAAATGCGGTTTTCCTCTAAACTGTGAAAACCTCTTGAAAACGGTGCAGGATATTCTCCAAGAAGACGGCCGCAAAACTCCTTTCAAAGACAACAAACCTGGTAAGAAATGCCGCGCTGAAATAACAGAGGaaggaataaaaaaatggtttactGATCTCAAAGAATACCTGACACAACAAAATGCTTTAGACATTCTTGAAGATTCCTCTAGAATCTTTAATGCCGATGAAACGGGATTCAGTATGGCTCCAAAAACTGGAAATGTCATTGCCccaaaaggaattaaaaatctTTACGAAGTCAAGGcagcaaatgaaaaagaaaacataactGTTCTGATGACTTTTTCAGCAGATGGAAGAACACTTCCTCCTATGGTGGTTTTTCCTTACGAACGATCTCCCAACTGGCTGAAATCAGTCCAAAATAAGAAGCCAGAATGGGTTTTTGGCAAGACGGAGAGCGGATGGATGCGGGGAGAAACTTTTCTTCAATATGTTAAAGAAGGTCTTAAAGTTTGGATTTCCAACAATGATATTAAACGTCCAgttatttttttcgtcgatggaCACGCTTCTCACATGTCCCTTGAACTAAGTGACTTTTGCAGTAgcgaaaacataattttatatgCACTTCCTCCAAACACCACCCATATCCTTCAGCCGGCGGATGTGGGCGCTTTTAAAGGTTTAAAGTCGgactataaaaatattttaaacgaaTGGCGCAAACGTTCGGGTAGTCACGGCAGCACGATTAACAAAGAGAGTTTTTGTGATGTGCTAGACGAGCTGCTGAATTACAAGGACAGGACGACCATCATACAAAATGCGTTCAGAAAATGTGGACTCTTTCCATTCGATCCAAATGCCGTTGACTATTCGAAATGCATCAAAAATGCGCTAGAAGCTTTAAATGCTAGCAATAGTGTTTCAGATCTTGGTGGTGATGCTGACAGCGGTTTAAATGTTGGTGATCCTGGTGGTAAATCTGGAGATGGCCGTGACGTTAATTCTGGTGCCGATGGGGATTCTGGGGGCAATCTTGGTGCAGATTCTGGTCGCGTGTCTGTTCGCGGTCCTGTGAATGATGCTGGTTATTTGGATTCTGATGTATATGGTAATCTTCGGAATGTACTTAACGAGGATTTTGTTGTCAACTTCGATTGCGATATAGGCCGCATTATGGATGTTGGTGGTGGTAATGCTACagatattacaaatgcaagttTTCTAGAAGCCGAAAAAGTAGTACTTCACTTAAAAGATGATCTCCAAAGTAGTAACATAGATCATAGTGTTGTGCTTGAAGTAATTCGTCAGGCAAAACAGAAAATGTTTGGCGTTTCTCAGAGTACCCAAGTAATTGAAGGGAATTACGAAATTACCTGCGATGGCACATTGTCAAGAATACCACAGCCCAATGGAGACGATTGGGAAGTAATCATGGGTGGGTACCTAGCTATAACTTTTGATTAG
- Protein Sequence
- MTPANKKHAKRAILYKGTDLEQALFEIRKNKLPIRAAARRFGIPRTTLQDRIHKRTADNLGKFGPCPVLSAEEENRLKIWIINLAKCGFPLNCENLLKTVQDILQEDGRKTPFKDNKPGKKCRAEITEEGIKKWFTDLKEYLTQQNALDILEDSSRIFNADETGFSMAPKTGNVIAPKGIKNLYEVKAANEKENITVLMTFSADGRTLPPMVVFPYERSPNWLKSVQNKKPEWVFGKTESGWMRGETFLQYVKEGLKVWISNNDIKRPVIFFVDGHASHMSLELSDFCSSENIILYALPPNTTHILQPADVGAFKGLKSDYKNILNEWRKRSGSHGSTINKESFCDVLDELLNYKDRTTIIQNAFRKCGLFPFDPNAVDYSKCIKNALEALNASNSVSDLGGDADSGLNVGDPGGKSGDGRDVNSGADGDSGGNLGADSGRVSVRGPVNDAGYLDSDVYGNLRNVLNEDFVVNFDCDIGRIMDVGGGNATDITNASFLEAEKVVLHLKDDLQSSNIDHSVVLEVIRQAKQKMFGVSQSTQVIEGNYEITCDGTLSRIPQPNGDDWEVIMGGYLAITFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_00315097; iTF_00315098; iTF_00315099; iTF_00315101;
- 80% Identity
- -