Cvar019254.1
Basic Information
- Insect
- Cheilosia variabilis
- Gene Symbol
- br
- Assembly
- GCA_951230905.1
- Location
- OX579678.1:14369290-14370730[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.3e-14 2.3e-11 44.0 0.0 3 43 288 328 286 330 0.91 2 3 0.038 20 5.8 0.0 27 37 359 369 350 374 0.87 3 3 3.4e-17 1.8e-14 54.0 0.0 3 42 397 436 395 438 0.93
Sequence Information
- Coding Sequence
- ATGAACCACCTAAAATGGATGGGCCACACGGCGACCATCCTCGATATCCAAAAGACTCTTAAAAATGATGCCGTCACTTGTGATATTACGCTTTCATGTCGGGGTAAATCGGTGAAAGCACATCGCTTTATACTATCTTCATGTAGTGACCTACTGCGTGATCTTCTAAGTGATGTTCCCGTCGGACAGGAGGCCACAATAATAGTGCCAGATGTGAAAGGCTGTCTGCTGGACAGTGTATTGGGCTTCGTATACATGGGGGAGACGAGTCTGTCATCAACAAACTTGTCTGAATTTCTTGAAGCCATTAGTATACTGGGTATCAAAAGCGCTATTAGCTTTGAATGTGCAAACAGTAGTTCCGCAAATAATAGCAAAAATGTTGCCGAAATGACAGAAATGGAAGAGGAACTAATGGAAGCCGAACCGGAGCAGGAAATTGTCGAAAAGGACGACGAAGAGGACCAAACGGTTGCTGAGAATAACAACGTCCGCGAATTGGAATTTCTTGAGGTTTATAATGATCAGGAAAAAATTAGCTACACCATCGAGAACATCATTCCGACCAATCCCAACGAATATATCCTTACCGAGAGTTCTGGCACCTTCACACTAACGCCAAATGCAAAAATCGATGGCAGTGAAGCCGGAGCTCTTGTCGAGAAACAAGATGAAGATAACCCAATGCTGGAGCATTATGTGGGTGACCCAATAGGTGACAGCAGTCAGTGTTCAAGCACAGATATGAAAGACGAAAAGTGCAGCAAAAAACTGAAAGACGAATTTAGTGAATTTCAAGCGCTTAGTCCGGATGACAGCAAGGGATATCAGAACTTTAATGAAACGCAGTCGGCCCGCGTCGAAGCACTAGAAAATGCAGTTTTAGCTGTTGTCGACGAGGGAATGAGTCTACAGAAGGCTGCCATCAAGTATAACATTTCAAAGACAGTCCTTTGGCGTCGTGTAAAAAAGCATCCGCTCTACATGAAGACGACTCGAGAGAATCCAGTTATAACAGCAGCCTGTGAACGTCTTAAAAGTGGAGACTCCCTTAAAAGTATTAGCCAAGCATTGGATATTCCCATGTCTACTTTGCATCGGCACAAGGTCAGGCTGGCACAGGAAGGGCGATTACCAGAGTATGTTACTTTTAAGAAACGTGGTCCAATGTCTAAGGAAATGCTAAAGGAGAAGCTCACAAAGGCTGTCCAAGCATGCCTAGGCAATGGCATGTCGCAGAATCATGCAGctaatgtgttcgatgtgccaAAGAGCACATTGTGGCGacatttgcaaaagaaaatgaGCCGCACGGAAGCTGGCAGCGAAGTTGACATTAAAGAGGAAGTGGTTCTACCATAA
- Protein Sequence
- MNHLKWMGHTATILDIQKTLKNDAVTCDITLSCRGKSVKAHRFILSSCSDLLRDLLSDVPVGQEATIIVPDVKGCLLDSVLGFVYMGETSLSSTNLSEFLEAISILGIKSAISFECANSSSANNSKNVAEMTEMEEELMEAEPEQEIVEKDDEEDQTVAENNNVRELEFLEVYNDQEKISYTIENIIPTNPNEYILTESSGTFTLTPNAKIDGSEAGALVEKQDEDNPMLEHYVGDPIGDSSQCSSTDMKDEKCSKKLKDEFSEFQALSPDDSKGYQNFNETQSARVEALENAVLAVVDEGMSLQKAAIKYNISKTVLWRRVKKHPLYMKTTRENPVITAACERLKSGDSLKSISQALDIPMSTLHRHKVRLAQEGRLPEYVTFKKRGPMSKEMLKEKLTKAVQACLGNGMSQNHAANVFDVPKSTLWRHLQKKMSRTEAGSEVDIKEEVVLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311727;
- 90% Identity
- iTF_00316154;
- 80% Identity
- iTF_00315340;