Basic Information

Insect: Cheilosia urbana
Gene Symbol: Sry-delta
Assembly: GCA_946477595.1
Location: CAMLCJ010000017.1:11731-12846[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.1e-05 0.0051 18.4 3.3 1 23 159 181 159 181 0.96

2 7 0.052 8.7 8.3 0.1 2 23 184 205 184 205 0.97

3 7 3.7e-05 0.0063 18.2 5.6 2 23 212 233 212 233 0.97

4 7 1.2e-05 0.0021 19.6 0.8 1 23 239 261 239 261 0.98

5 7 0.00014 0.024 16.3 3.3 2 23 269 290 268 290 0.96

6 7 5.5e-06 0.00092 20.8 0.7 1 23 297 319 297 319 0.98

7 7 0.16 26 6.8 0.1 3 23 343 364 341 364 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.1e-05	0.0051	18.4	3.3	1	23	159	181	159	181	0.96
2	7	0.052	8.7	8.3	0.1	2	23	184	205	184	205	0.97
3	7	3.7e-05	0.0063	18.2	5.6	2	23	212	233	212	233	0.97
4	7	1.2e-05	0.0021	19.6	0.8	1	23	239	261	239	261	0.98
5	7	0.00014	0.024	16.3	3.3	2	23	269	290	268	290	0.96
6	7	5.5e-06	0.00092	20.8	0.7	1	23	297	319	297	319	0.98
7	7	0.16	26	6.8	0.1	3	23	343	364	341	364	0.86

Sequence Information

Coding Sequence: atGGAGGAGTGCCTTCCTATCACAACAAGGTGCATATTGTGCCACCGAAAAAGCGAttccatttctgattttaaggACATAAATACAACAATTGTCAACATGTCCAAGAAATCTCTTAAAGACGTTCTATATCACCTCGCCAAATGTATTGAAATGACAGTCAAATTTACAGATGCAAACTCAACCTACACCTGCGATCTGTGCTATGAAAAACTGGTTGAATATGATATGGTAATGATTAAATTGCTCAAGCACCAAAAAGAACTCACAAAGCTGTTAAAAAGTTCAATGACTGTCACAGATGGCTTGACTGAAACTAACCAAATTGTTTTCAAAGTGGAAAATGTAAAATCCGAATCTGTGTCGAACAATGATGAAGTTACACAAAGTTATAACGATATCAACGTTGATAATGAAAATAATGATACAATGGATGAATCAATGGATTCCTCATCGAATCCTCCAAAAGCTTCATATTTGTGCTCAATATGTGGTAAAAACTTGAGTTCAAAATATTGTTTACGAAAGCACCTGAATTCTCATGCTAGGAGGTGTTACATTTGTGGAGTTATACGCCAAGATGAGCAATATCTGGAGCTACATATGAACGTTCATAATGGTAAAGCCGAGAACGAGTGTAGATATTGCCCCAAGAAGTATACTCGACGCTCGCACGTTATTCGACATATGCACACGCATTCGGACGAAAAGAAATTCCAATGTGAAAAATGCGGCCTAAGATTCTCTAAACCGAACCTGCTATATAATCATAGGCTGATTCATGATGCCGAAGAGAAGCCGCTGGTTTGCGATAAATGTGACCAGACATTCAAATCGATGAGAACGTACAAACACCATATGGTGACACATCAGGAGGATCGACCTAGGTATCCTTGTGAATTGTGTGCAAAAATGTTCACTGAAAAGTACACCCTCAAAGTGCATTTGAAAACTCACAACGTTGACTCGGAATCAATACATAAAAACAAGTCCTCACAGAAGAAGAAACAAATAGCAAAGTTGCCCTGTATTATATGCGACAATTTGTTTGTCACACAGCATAATTTGGACTTGCATATGGTTGAGGAGCACCATGTCATTTCTTCAGCTGACTGA
Protein Sequence: MEECLPITTRCILCHRKSDSISDFKDINTTIVNMSKKSLKDVLYHLAKCIEMTVKFTDANSTYTCDLCYEKLVEYDMVMIKLLKHQKELTKLLKSSMTVTDGLTETNQIVFKVENVKSESVSNNDEVTQSYNDINVDNENNDTMDESMDSSSNPPKASYLCSICGKNLSSKYCLRKHLNSHARRCYICGVIRQDEQYLELHMNVHNGKAENECRYCPKKYTRRSHVIRHMHTHSDEKKFQCEKCGLRFSKPNLLYNHRLIHDAEEKPLVCDKCDQTFKSMRTYKHHMVTHQEDRPRYPCELCAKMFTEKYTLKVHLKTHNVDSESIHKNKSSQKKKQIAKLPCIICDNLFVTQHNLDLHMVEEHHVISSAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00311331;
90% Identity: -
80% Identity: -