Curb010659.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cheilosia urbana
Gene Symbol
-
Assembly
GCA_946477595.1
Location
CAMLCJ010000078.1:1555439-1558886[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.11 18 7.3 1.9 2 20 788 806 787 808 0.93
2 8 0.035 5.8 8.8 4.7 1 23 814 836 814 836 0.98
3 8 0.01 1.7 10.5 0.5 2 23 841 862 840 862 0.97
4 8 1.6e-06 0.00027 22.5 0.3 1 23 868 890 868 890 0.99
5 8 3.5e-06 0.00058 21.4 0.2 2 23 897 918 896 918 0.97
6 8 2.8e-05 0.0046 18.6 0.8 1 23 924 946 924 946 0.96
7 8 0.00012 0.02 16.6 1.5 1 23 952 974 952 974 0.95
8 8 0.00056 0.093 14.5 3.4 1 23 980 1002 980 1002 0.96

Sequence Information

Coding Sequence
atggctAGTGCGGCTGTTTCAACAATCGTCTCGCACAATCCGCCAGGGCTAGCTATTACCACACATTGTGGAGTAGTTTACTGTTCACCGACATTCGAGGACTTCTCGATAAATTGCACTACATGTTCACAGGAATTTAACTTGCTTAGCTGCAATATCTTCATCAAACACATCAAAGAATGTCTATCTACTGTGTTTCCCATTCCACGATCTTTGGTCCACACAGTTTCGAATAGCTCCATCGAAGAAGTTTTCACTTCGTCGGTAAAATGTGACATCGCCGAAAGTCCTGATCCTGAAGCTCATTTTGACCCACTGTTGCCAATGAAAGCGGAAATTGAGCCGCCGGATTTTCAAGAAGAGCTATGCAACGAAGCCGACAACCTCTCTGACTACAATGACGAAGACGATTTGTCCGTTTCAAATGGGGCACGTCGTAAAATGATAATTGAAATAATCGAAGAATACAAGAAGCATCCACTTTTGTGGGATGTGAATTTGAGTAAATCTGCAACGGTAGCGGAAAAAGCAATTCATTATAACCAAATCGAAAAAGTCGTCAATGCCAAATTTGGAACGCATTTTACAGACATTGAATTTCGGAGACAGATCTCCAGGTTGAGGTGTAGCTATCGACATGTACTCGAAGAACAAGAGGAGCACGGGAGCACGTCACAGTTGTGGTACTTTGACAAGATGCATTTTATTATGGGAACAATCGATGATCTTAAATCGGAGGTAGCGCATGAAGAGGCACTAGATTCCGATGATGAATATTTCGCCGAATTTCAGGACATTGAGACGTTCGACTATGATGAAGAATCCAAAACCGACAACGAAGATGATGGTGAATCTTCGCATGTAGGAGAAGATGTAAGCACAGCAACTATAGTTCTAACCCTTATCAATGAATACAAGAAATATCCGTGCTTGTGGGATTATGATCTCTGCAAAACAAGCAGTCGTTCCACTCGTGACAGTGCATTCCAATCAATTAGAAAGGCAATCAATACaagatttaacaaaaatttcACCGACACAGCCATTAGGCGTAAGATTGTCCAACTGAGAGGGAACTACAAGCGTGTGCTACGCAACAAAGACGCCTACGAACGCGATAATCCGAACGCAACAGAAAACTTCCCCGTAAGCTTGCATTACTTTGATCAATTGTCGTTTATTGGAAGCAAATCCAGTGATGCACAAATTGCCTCGCATCCCCACTCAAAAGAACTCTACGAACAGATAACAAATGAAGACGTTACCAACATGTCCGTTGATAGTTACCAGAAGTTCAACACCAAGTCTCACGGTGGCAACAAAAAGCCGTACAAAGAATTACTCAAGGAAAATTGTGAACTTTTGACTTTCGTCATAGAGGAGTACAAGAAACAAACATGCCTTTGGTCCTTAAAACATTACAAAGAGAACAAATCTGTTCGACGCGCTGCCTATGCAAACATGGCCACAGCTATAAATGACAAGTTTAAGACAGAGTTCACACTCGAAAATCTGAGGACGGAGATATGCAGGTTGCGCTCTTCGTACATGCGCATGTTGCGTAAGAAACGGGAAGATCCGAATTATAAAACGACCATGTGGTGCGCCGATATTTTGTCTTTCATTGAGAATAATGACGAAACTGAGAACGATGATAATAACTTGGCTGAAAATGATTTgagtaaaagaaaaaagtacCAAGGGaaaaactaCGTCCTTGCGATCATCAAAGTTTATAAGAACTCGCCCATTTTATGGGACACCAACCATCGATGGTATCTGGTGCGGAATGAGCGAAGGAAAGCCTTTGAAGCTATATTATCCACCCTCCGCGAAGAGCACAACTACAAATTAACATCTGCCCAGCTCCGTCATCGACTGGATTACATGAAAAAATGCTACTTCCGTGCACTGCACAATGAAGTCAGCACCAAGCCGTTTTTTTATGATCAAATGTCATTCCTTGCACCCTTTGCCAAAAGGAACACCGATCATGCTCCAAATGTCGATATGAAGAAAACTTTGGGTGAAGAGTTTTCATATCTCACCGAAAACAGACCGCTCATGGTCAAATTTATACGAAAGTACAAAAGTCTCACTTGCTTGTGGGATCCGAAAGACATACGCAATGCATCGGTTCAGTCGAAAGCCTACGATAAGATTATGAGGATGTTAGCAAAAAACGAAGTAATTCTTACAAAAGAACAAGTCTTGTCGGCAACTAGACTTCTCCACACAACAGTGGAGAATACACAGAAAGGCATTGAACGCGACGTCATGCGTAACGAGCAAAAAGCCGAAAGAGCCTGGTTCTATAAATACCTTAGTTTTCTTGGTAAGGTTCCCCGAGTCGGCGACAAATACTGCTCACATTGCagcacacatttccgcacaGCACTTGAGTATGAGAAACATAAAATCGAATTAGGGGAATCCCCCTACATTTGTACTCTTTGCAATAAGGGATGTACGACACGAAACATATTCAAATACCACATGAAGACACACAATGTGCCAATTAAATGTGACAAGTGCGACTTCCAGGCATATGACAAGGAAGGTTTTAGAGTCCACATGAACCGGCACCTGGGGATCACGCCATATCAATGTGAGCTGTGTGAAAAAGGATTCGTAACGTCGAGCGAATTGAGCCGACATGTGTTAACACACACCGGTGAGAAGCTGGTCGTTTGTGAAATTTGCGGAAAAAAGTATCCAACCAATTCAGTGCTCAACCAGCACATGAAACGACACCTCAACCAGCGAGATCACAAGTGCGAATTGTGTGACAAAGCGTTCTACAGCATGGAGTCCTTGCAAAACCATATGGCAGGCCATACGGACGAGCGAAAACACGTCTGTGAAATCTGTGGCGCTTCTTTCAATCGGAAGATGACACTGCGTCAGCACAAAACCCTGCACGATGAGCAAAAGAAGCACGCCTGCAAGATCTGTGGAAAACGTTTTGCCCAAAAGGCGGGACTATACTGTCACATGAAGTCACACAATCTGTTCGCTAAGAATTGA
Protein Sequence
MASAAVSTIVSHNPPGLAITTHCGVVYCSPTFEDFSINCTTCSQEFNLLSCNIFIKHIKECLSTVFPIPRSLVHTVSNSSIEEVFTSSVKCDIAESPDPEAHFDPLLPMKAEIEPPDFQEELCNEADNLSDYNDEDDLSVSNGARRKMIIEIIEEYKKHPLLWDVNLSKSATVAEKAIHYNQIEKVVNAKFGTHFTDIEFRRQISRLRCSYRHVLEEQEEHGSTSQLWYFDKMHFIMGTIDDLKSEVAHEEALDSDDEYFAEFQDIETFDYDEESKTDNEDDGESSHVGEDVSTATIVLTLINEYKKYPCLWDYDLCKTSSRSTRDSAFQSIRKAINTRFNKNFTDTAIRRKIVQLRGNYKRVLRNKDAYERDNPNATENFPVSLHYFDQLSFIGSKSSDAQIASHPHSKELYEQITNEDVTNMSVDSYQKFNTKSHGGNKKPYKELLKENCELLTFVIEEYKKQTCLWSLKHYKENKSVRRAAYANMATAINDKFKTEFTLENLRTEICRLRSSYMRMLRKKREDPNYKTTMWCADILSFIENNDETENDDNNLAENDLSKRKKYQGKNYVLAIIKVYKNSPILWDTNHRWYLVRNERRKAFEAILSTLREEHNYKLTSAQLRHRLDYMKKCYFRALHNEVSTKPFFYDQMSFLAPFAKRNTDHAPNVDMKKTLGEEFSYLTENRPLMVKFIRKYKSLTCLWDPKDIRNASVQSKAYDKIMRMLAKNEVILTKEQVLSATRLLHTTVENTQKGIERDVMRNEQKAERAWFYKYLSFLGKVPRVGDKYCSHCSTHFRTALEYEKHKIELGESPYICTLCNKGCTTRNIFKYHMKTHNVPIKCDKCDFQAYDKEGFRVHMNRHLGITPYQCELCEKGFVTSSELSRHVLTHTGEKLVVCEICGKKYPTNSVLNQHMKRHLNQRDHKCELCDKAFYSMESLQNHMAGHTDERKHVCEICGASFNRKMTLRQHKTLHDEQKKHACKICGKRFAQKAGLYCHMKSHNLFAKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00316289;
90% Identity
-
80% Identity
-