Basic Information

Insect: Cheilosia urbana
Gene Symbol: -
Assembly: GCA_946477595.1
Location: CAMLCJ010000086.1:1522115-1523957[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.9e-05 0.0048 18.5 1.5 1 23 123 145 123 145 0.98

2 11 0.0024 0.4 12.5 0.1 1 19 152 170 152 172 0.94

3 11 0.04 6.8 8.6 0.2 1 23 189 211 189 211 0.96

4 11 0.0001 0.017 16.8 1.6 1 20 215 234 215 237 0.92

5 11 9.3e-05 0.016 16.9 1.2 1 23 243 265 243 265 0.98

6 11 1.8e-07 3e-05 25.5 0.6 1 23 274 296 274 296 0.98

7 11 8.9e-05 0.015 17.0 2.0 2 23 303 324 302 324 0.96

8 11 9.8e-05 0.016 16.8 12.8 1 23 330 352 330 352 0.98

9 11 6.8e-06 0.0011 20.5 3.7 1 23 358 380 358 380 0.99

10 11 1.3e-05 0.0022 19.6 0.6 1 23 386 408 386 408 0.98

11 11 8.5 1.4e+03 1.3 0.2 1 22 424 445 424 447 0.69

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.9e-05	0.0048	18.5	1.5	1	23	123	145	123	145	0.98
2	11	0.0024	0.4	12.5	0.1	1	19	152	170	152	172	0.94
3	11	0.04	6.8	8.6	0.2	1	23	189	211	189	211	0.96
4	11	0.0001	0.017	16.8	1.6	1	20	215	234	215	237	0.92
5	11	9.3e-05	0.016	16.9	1.2	1	23	243	265	243	265	0.98
6	11	1.8e-07	3e-05	25.5	0.6	1	23	274	296	274	296	0.98
7	11	8.9e-05	0.015	17.0	2.0	2	23	303	324	302	324	0.96
8	11	9.8e-05	0.016	16.8	12.8	1	23	330	352	330	352	0.98
9	11	6.8e-06	0.0011	20.5	3.7	1	23	358	380	358	380	0.99
10	11	1.3e-05	0.0022	19.6	0.6	1	23	386	408	386	408	0.98
11	11	8.5	1.4e+03	1.3	0.2	1	22	424	445	424	447	0.69

Sequence Information

Coding Sequence: ATGTCGACTGCTGTAGAAGAGAGTAAAAATACAAGAATTGCCTTCGATTGCATTTGCCGCTGCTGTTTAACGGACAAAACTGAGCTGAGACCAATATTTACTTCAGTCGGTAGCATTCCACAGGCGATTTTCTTATTCACAGCCGTAGAGGTCAAAAAAGATGATGGATTCCCTGGGAATATTTGCGTCAACTGCTTACATCAATTGAACAAGTGTCTGGAGTTCAAGCGAAAAGTGGAAGACGCTGCTGTGCACCTGCAAAGGTCTTTGACAACAAAATCATCACAAAAAATCATAGTGGAAGACGGTGACAACGTTCGTGAAAATGTTCAAGTACCTTCGCATAATACTATAACTTCGTCACTCTATACGTGCACTCTGTGCACTCGATCATATGCAAgtaaatATGCCTACAATCGTCACGTCAAAGTACATACTCAAAAGGAAAACATATTTCGCTGCAATGCCTGTGGTAAACGGTTCACAGATTTGCCAACTTTTGAAGATCATGAAATCTGTCATAGCCAAGAGAAAACCATTGGCGGGCCTTCTACAAAACTGGTGTATACGTGTCAAATATGTAAGGACGTCTTTATGGCGCAAGAAGATCTATTCGTCCACACTTCTCTGCATGAAGAAGTTCACAAGTGTAAATCTTGTGGCAAAGACTTTGCAAACCTAGCAAAACTCAAGCGTCACATTCCCAGACACTTTATCGAGAAACCTTTCAAGTGTAAGGAATGCAACATGGGCTTCTCGGAAATGGCATCGCTTTCCCGCCACTATCAAAGGCACACGCGAAGGAAACTCGCAGTAACTCACACCTGTTCAATTTGCGGAAAGGGCTTTCCCAATCCATATTCTCTGAAAGTACACACACGCGTTCATACCGGTGATCGTCCGTGGGAGTGTACGAATTGCAATAAGCGATTTACCGACTATCGTCTCTTAAATTCGCACAAGAAGCTGCATTCAGATGAGAAGCCGCACAAATGTAACCAGTGTAGAAAGTGTTTCAGGCATCATTCAACGCTGATTACCCACATGCGGACTCATACGGGTGACCGTCCATTTCGCTGTGACAAGTGCAAGAAATCTTACAAACAATCGTGGAGTCTTCAGATACATAAACGCAAGCATGCTATTGCTAAACAGTTTGTCTGCAAGCAGTGCCACCAAGTGTTTACTGTAGCGGCCTTGCTCAGAGATCACATGCAGTGGCACAGCGATCAAGCTGCGTCGCATGATCAAGACCCACAAGTGGAATACTTTCAGTGCAAATGGTGTTCCGCACAACTGTTATCCCGTTTGGATCTTATTACTCATGAAAAACTTACCCATGCTCTGAGCCATCAATGCGACACTTGCTTTGGTAAATGGAAAACCCTAGAGGAGCTGGTTCAACATAAGTGCGACGAGGCTTTTCAGGCGTCTGATGAGCCGACCCCTGATGAGATGATATTGCTACCTAGTGGAGAGGTTCAGGATTGTACTACGGTTGTCAACGCATTGTTGGCTTCCATTTTAGACGAACAAAAATCTATGCACAATTGCAGTAATAAAACCTAA
Protein Sequence: MSTAVEESKNTRIAFDCICRCCLTDKTELRPIFTSVGSIPQAIFLFTAVEVKKDDGFPGNICVNCLHQLNKCLEFKRKVEDAAVHLQRSLTTKSSQKIIVEDGDNVRENVQVPSHNTITSSLYTCTLCTRSYASKYAYNRHVKVHTQKENIFRCNACGKRFTDLPTFEDHEICHSQEKTIGGPSTKLVYTCQICKDVFMAQEDLFVHTSLHEEVHKCKSCGKDFANLAKLKRHIPRHFIEKPFKCKECNMGFSEMASLSRHYQRHTRRKLAVTHTCSICGKGFPNPYSLKVHTRVHTGDRPWECTNCNKRFTDYRLLNSHKKLHSDEKPHKCNQCRKCFRHHSTLITHMRTHTGDRPFRCDKCKKSYKQSWSLQIHKRKHAIAKQFVCKQCHQVFTVAALLRDHMQWHSDQAASHDQDPQVEYFQCKWCSAQLLSRLDLITHEKLTHALSHQCDTCFGKWKTLEELVQHKCDEAFQASDEPTPDEMILLPSGEVQDCTTVVNALLASILDEQKSMHNCSNKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00312071;
90% Identity: -
80% Identity: -