Basic Information

Insect: Cheilosia urbana
Gene Symbol: -
Assembly: GCA_946477595.1
Location: CAMLCJ010000078.1:3498116-3506243[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.1e-07 8.5e-05 24.0 1.6 2 23 148 169 148 169 0.97

2 10 5.8e-07 9.7e-05 23.8 0.5 1 23 175 197 175 197 0.98

3 10 2.4e-07 4e-05 25.0 0.7 1 23 203 225 203 225 0.98

4 10 1.3e-05 0.0022 19.6 0.9 5 23 237 255 231 256 0.91

5 10 6.9e-05 0.012 17.3 2.9 1 23 261 283 261 283 0.97

6 10 3.4e-05 0.0057 18.3 3.6 1 23 289 312 289 312 0.98

7 10 0.0085 1.4 10.7 2.4 1 23 318 340 318 340 0.97

8 10 5.6e-05 0.0094 17.6 0.7 1 23 345 367 345 367 0.98

9 10 0.00057 0.096 14.4 0.5 2 23 374 398 373 398 0.96

10 10 8e-05 0.013 17.1 1.0 2 23 545 567 544 567 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.1e-07	8.5e-05	24.0	1.6	2	23	148	169	148	169	0.97
2	10	5.8e-07	9.7e-05	23.8	0.5	1	23	175	197	175	197	0.98
3	10	2.4e-07	4e-05	25.0	0.7	1	23	203	225	203	225	0.98
4	10	1.3e-05	0.0022	19.6	0.9	5	23	237	255	231	256	0.91
5	10	6.9e-05	0.012	17.3	2.9	1	23	261	283	261	283	0.97
6	10	3.4e-05	0.0057	18.3	3.6	1	23	289	312	289	312	0.98
7	10	0.0085	1.4	10.7	2.4	1	23	318	340	318	340	0.97
8	10	5.6e-05	0.0094	17.6	0.7	1	23	345	367	345	367	0.98
9	10	0.00057	0.096	14.4	0.5	2	23	374	398	373	398	0.96
10	10	8e-05	0.013	17.1	1.0	2	23	545	567	544	567	0.93

Sequence Information

Coding Sequence: ATGGAGAGTATCTGCAGATTATGTTTTCAACCAGCAGCGTTGTTTCAGGTGCCTGGCTATAATCTCCCAACCTGTGTCAAATGTTCGGAGCATTTGACCACAAACGGTCTAACTGCGAACTTCTATCAAACAATCAGGCAGGATTTACCAACCACTACAAGTGCGGCTAACAACACAACGCCAACAATCACCACAAACGGTGGCACAACAATACaagtgcagcagcagcagcagcagcagcagcaacaacaaccgcaacagcaacagcagcaacagacAACGAACGCATCCGAGAATCATCAGTCCGACGATATAAATAGCCAACAACTAAGTGGTTCTATGTCCAATCAAAACGGCGTGAAAAAAACCGAAACAATGTCATTTGATTTGGAGAAAACCATTCAAACCATAGACGTGGACATACTGTTCAATGAGGAGGGCTCGTGCCCGCTCTGCTCGAAGACATTCTCGAGGAAGTCGTCTCTACTGACGCACATACGAAACCATTCGGCTGAGAGGAAGTATGTTTGCACGTTTTGCAATAAGGGCTTCACACAGGCCGCGAATTTACGCAACCACGAGCGAATACACACAAACGATAGGCCTTATGTTTGTGTTGATTGTGGCAAGACATTTACACAGATAACAAATTTGAACAATCATCGGCGGTTGCATACGGGAGAACGGCCATTCGTGTGCATCGAACAGGAATGCGGACGATCGTTTGCTCAAGTAACAAATCTAAACAACCACATGAAGACACATCACAAAGTCCAACAGTATTGTTGCAATCAATGCCCGAAGAAATTCACCCAAGTCACCTCACTGAATCAGCACCTGCAGGCGCATGCTGGCATCACCGGCTACTACTGTCCCCGATGCCCGGAGAAAACCTTCAAACAGCAATCGCAACTGCACACGCACATGAAGTCACACGGCCTGGCCTTCCCGTTCGAGTGTCAAAAGTGCGATGAGAAATTTCTGCAACAAGCACACCTCGACCAACACAACAAAATGCACGACGAATTCAAATTCAAGTGTGACATGTGCCCGAGCTCCTTCAATCAGGAGGTGCTACTCAAAAAGCACGTCCAACGTCACATCGAAGGGAGGTACATTACATGTCCGGTAGCTAATTGTAACCAAGCTTTCGCCGTTAAACAACACTTATCGAAACATCTTCTTACTCGCCATTCTCACAGTGAACTGCCGCCGCCCAAGCGTTCTaaaaaacagcagcagcaacttcAGCTCCATCAGCCGATACAAATGATTGGGCAGCCACTGTCGATACAACATCACACACCAGGGCAACGTGGTCGTCCGCCAAAGAAGAAgaatcaacagcagcagcaattaAATCATTCAAATGTTCAAACAATTAAGATCGAAATACCAACGCAACATCAGCAGCATGTTGGCGGTGCTACAATTCAAATCAATCATATGCCACAACAGCAaactggtggtggtggtggtggtggcactGAACTTGGCAGCCATGTAAAAACAACAGTCGTGCAGGCAACATTGgtcaacaataacaacaacaacaacaacaatcatcaacaacaacaacagcagcaacaacaacaacaacaacacgaaCAAATCGATACCAGCGATGATCTTAAATGCCATGACTGCGGTGTAATATTTACAAATGAAAACGAACTGAGGGATCATATATTCTACAAGCATCCCGAACGGAGATTCATGCAGGTACTATTACAAAATGGGCACAATTCGATTCTGTCCGATGCTAGGAATTTGCTAATATTCAAGTATCAATAG
Protein Sequence: MESICRLCFQPAALFQVPGYNLPTCVKCSEHLTTNGLTANFYQTIRQDLPTTTSAANNTTPTITTNGGTTIQVQQQQQQQQQQQPQQQQQQQTTNASENHQSDDINSQQLSGSMSNQNGVKKTETMSFDLEKTIQTIDVDILFNEEGSCPLCSKTFSRKSSLLTHIRNHSAERKYVCTFCNKGFTQAANLRNHERIHTNDRPYVCVDCGKTFTQITNLNNHRRLHTGERPFVCIEQECGRSFAQVTNLNNHMKTHHKVQQYCCNQCPKKFTQVTSLNQHLQAHAGITGYYCPRCPEKTFKQQSQLHTHMKSHGLAFPFECQKCDEKFLQQAHLDQHNKMHDEFKFKCDMCPSSFNQEVLLKKHVQRHIEGRYITCPVANCNQAFAVKQHLSKHLLTRHSHSELPPPKRSKKQQQQLQLHQPIQMIGQPLSIQHHTPGQRGRPPKKKNQQQQQLNHSNVQTIKIEIPTQHQQHVGGATIQINHMPQQQTGGGGGGGTELGSHVKTTVVQATLVNNNNNNNNNHQQQQQQQQQQQQHEQIDTSDDLKCHDCGVIFTNENELRDHIFYKHPERRFMQVLLQNGHNSILSDARNLLIFKYQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01521342;
90% Identity: iTF_01116602;
80% Identity: -