Basic Information

Insect: Cheilosia urbana
Gene Symbol: -
Assembly: GCA_946477595.1
Location: CAMLCJ010000277.1:506382-508418[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.002 0.34 12.7 1.3 2 23 105 126 104 126 0.95

2 10 0.042 7 8.6 2.6 1 23 206 229 206 229 0.92

3 10 1.8 3.1e+02 3.4 0.7 2 22 237 257 236 257 0.83

4 10 9.5e-07 0.00016 23.2 3.0 1 23 306 328 306 328 0.96

5 10 6.2e-07 0.0001 23.7 2.0 1 23 335 357 335 357 0.98

6 10 9.1e-08 1.5e-05 26.4 1.2 3 23 372 392 371 392 0.99

7 10 2.1e-06 0.00036 22.1 0.4 1 23 398 420 398 420 0.99

8 10 1.2e-06 0.0002 22.9 0.3 1 23 426 448 426 448 0.98

9 10 2.7e-08 4.6e-06 28.0 0.2 1 23 452 474 452 474 0.99

10 10 0.0045 0.75 11.6 0.1 1 19 476 494 476 497 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.002	0.34	12.7	1.3	2	23	105	126	104	126	0.95
2	10	0.042	7	8.6	2.6	1	23	206	229	206	229	0.92
3	10	1.8	3.1e+02	3.4	0.7	2	22	237	257	236	257	0.83
4	10	9.5e-07	0.00016	23.2	3.0	1	23	306	328	306	328	0.96
5	10	6.2e-07	0.0001	23.7	2.0	1	23	335	357	335	357	0.98
6	10	9.1e-08	1.5e-05	26.4	1.2	3	23	372	392	371	392	0.99
7	10	2.1e-06	0.00036	22.1	0.4	1	23	398	420	398	420	0.99
8	10	1.2e-06	0.0002	22.9	0.3	1	23	426	448	426	448	0.98
9	10	2.7e-08	4.6e-06	28.0	0.2	1	23	452	474	452	474	0.99
10	10	0.0045	0.75	11.6	0.1	1	19	476	494	476	497	0.94

Sequence Information

Coding Sequence: ATGAATCAAGTGGCAAAGAGTTCCGTTGATTTGGAATCCAAATCGCAGAGTTCAGGAGAAGAATACTCTTCGAAAAGTTGGGATGAAGAGGAGGACAAAATTACATCCAGAACTCGCAGTGGAACTAACCGCAAGTATCATATTCGggcaaaacagaaaaaaaagattcACAGCAAGGTAAAATCTTCAATTAAGTTGAAAAAGCCTGCCACGGAGGTAGATTTTGAACCAGAGGACATTTCGACACAGCCAGGCATACTTAAATCAGACATCGAAGAGGATGAATGCATACCAAACGGTACAAAGTCAATAGAATGTTTTGTCTGTGGCTGTAGACTTAGTAAAATCTACAATTTACGTCGGCACATGACGGCGCACGCGAATGGTGAGTCCTTCGATATGGAAGCCTTTGAAAATTCGGAAATATTCAAATTACTCAATCCACACAAGAGGAAGATCGATTCGAATGTAATTAAGAATTTCGTAATTCAGGAAATCAAAGCAAAGCGCTACTCCCAGTTGTATTGCATCCTCAGTGAGGCAGCCGTTGAGCTGCACATCAGTGATTCCGAAACCGATTCAGATGGAGCCTGTGACCTAATACCTAGCAACAACTATCGATGTGAACTCTGCAAGAAGAACTTCGACCGCCGCTACAAGGCGCTGTTCCACCAGAAAACCGGACATCTGAAGACGGATTTTGCAGTCGAATGTGACTATTGCCTGAAAAAGTTCGTCTGCATGAACCTTCTGATATATCACTTGAAAACCCAGTGCGAGAGTGATGAGAAGCCAGTGCCGTGTACAGAGCGCTTCATGAAATTCCTTCTCAAAGCCAACCTTGACTACTATGCGAACCTTTCTCAGGCCAGGGAGCAGAGGAAATTGAGCAAGTTGACGGACGCCCCAAAGTCATACACATGTAAGGTATGCAATAGGACATTCACGCGACAGGAACACCTGAATAGACATAGTGCTGTCCATCTACCCGACGAGATGAAGTTCGAGTGCGCTGTTTGCAATCGACGTTTCAATCGAAAGGACAACATGCGTTCGCACATGAAGACGCACACCGAGGAGGGAGCGCTAATTGCGGAATCTCGAAAAATCCTTTGCTCCTACTGCGGACGCAGTTTCAGCAGTAAATCCAACTACGTGGTGCACATGCGACGTCATACCGGAGAGAAGCCGTACAAGTGCGACGTCTGCGGGAAGGGATTTCCCAAGTCGACAGATTTGAACTCGCACAAGATCACCCACACTGGAGAGAAAAACTTTATCTGTACGATTTGCAAGAAGGCGTTTGCAAGGTCAGCAGTTCTTTCGAAGCACATGCGTGTGCATAAGGGACCCTATCAGTGTACGTTGTGTGATAAAGTCTTCCCCAAGCCAAGTGCCTTGACAGCTCATTTGCGAACTCATTCACATAGCTGTGCTGCGTGCAACGAGACATTTGACTCAAAGAGTGACTTGGAAGCCCATTTCGTTGCAAAAGGTCACAGTAACGAGCCCCGGCGGCTAATAGTGATTAGAGAAGTTGCTGCAGCAACTattgacaaaacaaaacataCCGTGCCACCGTCAACACCTACACCATCACCTCCTCCCCCACAGCCACCAGTACCACATACAAGTGACGATCCGTTGGAAATTAAAGAAGAAGAATGGCGAACGACAAAAGTTAAAGTTCCTGTAAATGAAGTGATCCAGAGCGTATTGCAGAGATCTACACCCACAGCTGGCGCTGAGGTGAGCGTGAGTACTAGCACGGAAGGGGAAGCGGTGGCGGCTCCTGAGAATGAAACGGTTATGCCTTATTCACCGTTGAACGATGGGTATGAGGATGATATGCAGTATGATTGGTAA
Protein Sequence: MNQVAKSSVDLESKSQSSGEEYSSKSWDEEEDKITSRTRSGTNRKYHIRAKQKKKIHSKVKSSIKLKKPATEVDFEPEDISTQPGILKSDIEEDECIPNGTKSIECFVCGCRLSKIYNLRRHMTAHANGESFDMEAFENSEIFKLLNPHKRKIDSNVIKNFVIQEIKAKRYSQLYCILSEAAVELHISDSETDSDGACDLIPSNNYRCELCKKNFDRRYKALFHQKTGHLKTDFAVECDYCLKKFVCMNLLIYHLKTQCESDEKPVPCTERFMKFLLKANLDYYANLSQAREQRKLSKLTDAPKSYTCKVCNRTFTRQEHLNRHSAVHLPDEMKFECAVCNRRFNRKDNMRSHMKTHTEEGALIAESRKILCSYCGRSFSSKSNYVVHMRRHTGEKPYKCDVCGKGFPKSTDLNSHKITHTGEKNFICTICKKAFARSAVLSKHMRVHKGPYQCTLCDKVFPKPSALTAHLRTHSHSCAACNETFDSKSDLEAHFVAKGHSNEPRRLIVIREVAAATIDKTKHTVPPSTPTPSPPPPQPPVPHTSDDPLEIKEEEWRTTKVKVPVNEVIQSVLQRSTPTAGAEVSVSTSTEGEAVAAPENETVMPYSPLNDGYEDDMQYDW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00313674;
90% Identity: iTF_00316202; iTF_00311243; iTF_00315383;
80% Identity: -