Basic Information

Insect: Cheilosia urbana
Gene Symbol: -
Assembly: GCA_946477595.1
Location: CAMLCJ010000257.1:297672-300200[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00014 0.024 16.3 6.4 1 23 172 194 172 194 0.98

2 10 1.2e-06 0.0002 22.9 4.9 1 23 200 222 200 222 0.99

3 10 1.2e-05 0.002 19.7 2.8 3 23 236 256 234 256 0.95

4 10 0.00038 0.063 15.0 0.4 2 23 263 284 262 284 0.97

5 10 4.6e-07 7.7e-05 24.2 6.5 1 23 290 312 290 312 0.99

6 10 7.2e-07 0.00012 23.5 0.7 1 23 318 340 318 340 0.99

7 10 9.8e-08 1.7e-05 26.3 1.0 3 23 348 368 347 368 0.99

8 10 0.0012 0.2 13.4 0.7 3 23 376 398 374 398 0.91

9 10 4e-06 0.00068 21.2 1.5 1 23 404 426 404 426 0.98

10 10 3.1e-05 0.0052 18.4 0.7 1 23 432 454 432 454 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00014	0.024	16.3	6.4	1	23	172	194	172	194	0.98
2	10	1.2e-06	0.0002	22.9	4.9	1	23	200	222	200	222	0.99
3	10	1.2e-05	0.002	19.7	2.8	3	23	236	256	234	256	0.95
4	10	0.00038	0.063	15.0	0.4	2	23	263	284	262	284	0.97
5	10	4.6e-07	7.7e-05	24.2	6.5	1	23	290	312	290	312	0.99
6	10	7.2e-07	0.00012	23.5	0.7	1	23	318	340	318	340	0.99
7	10	9.8e-08	1.7e-05	26.3	1.0	3	23	348	368	347	368	0.99
8	10	0.0012	0.2	13.4	0.7	3	23	376	398	374	398	0.91
9	10	4e-06	0.00068	21.2	1.5	1	23	404	426	404	426	0.98
10	10	3.1e-05	0.0052	18.4	0.7	1	23	432	454	432	454	0.95

Sequence Information

Coding Sequence: ATGCAGTTCGGCGGAGAAATAtacgaaataaacaaaatatgtcgTTGTTGCCTCAAGAATATTGGTGAGATGAAACCACTGTATGGATTTTCTCTAGATATAATGCTAAGCTCTGTCGCTAATCTGCAGGTAGAACGTAGTGATGGTCTCCCGGAGCTCCTTTGCTTTCAATGTATATTACAGCTAAGTCGAGCGTTTCGTTTTAAGGAGCAGTGTCTGAAATCGGATACTACAATCCGTGAATACATAAGGGTCAGTGCAAGTAAACCACCCAGATCATCTATCTTGAGTGAGTGTAAATTTATAGTAGAAGATGTCAACCAACAAATAAAGAAAGATGAAGAAACGATTTCAAATAATGCCGAATATCAAACTCTGTATGAAGGTGATTCCTATTCCTACGGCAGTCCTGTTGACCACAATGAGCTCGTACCGATATCTGAGGAAAAAGCTGGAATTGCCCAAAATCGCGGATGTAAACAATCGaagaaCAACAACTGCAACAAGACCGAGTTCAAATGCCAGACATGTAGCAAGAAATTTACACACCGTAAACAGTTGGTACGTCATAGTAAAATCCACGACAGTGCCAAGCCATACAAATGTTCAGAGTGTGACAAGACTTTTACAGAGAAATGCAACTTAAACAAACACTTGCTGAAACACACTGGTGAATTGCGAAACACCTCAAACAAACGTCATCTATGTACTATTTGCGGAAATAGCTTCAAATACTCCAGTTCACTGGCCAAGCATATGAAATTTCATACTGGTAAAAATCTTCTACAATGTCCCAATTGCCCAAAATACTACGCGGAGAGGACAGCTCTCGAAATTCATTTGCGACATCATACAGGAGATCGTCCTTACACCTGTCATCAGTGTGACCACCGATTCACACAAGCCTCTAATCTGCGTAAACATTTACGCTCCCATAGCGATGAGCGACCATTCAAATGTACCATCTGTGAGCGAACGTTTGTCGAACGTAGTTACCTTGCAATACACATGCAAACGCATAGTTCAGAAAAGAAAACCCTCTGCAGTAAATGTGGGAAGAGCTTTGCTAACTCAAAAACTTTAAAAGCGCACATGCGAATACACACCGAAGAGCGACCTTACCTATGTGGCTTCGAAGACTGCCATAAGGCATTCACTCGTCTAGACACGGCGCTGGCACATCGGCGAATACATTCTGGAGAAAAACCATACTTCTGCAGTGTCTGCAGTCGCTCCTTTACTACAATCACTCAGCTCACAATTCATTTGCGAACTCACACCGGTGAGAAGCTATTCGCATGTGAACTTTGTCCAAAAAAGTTCGCGAGCAAAAACAATTTGAAGATGCACTCCATAAAGCATGTGAATACTCAGCCAATAGATGGTGGACAACAATACACTGATCTAAGTAATCAGCAACTGGAAAATGAGGAAATTACATTTTACCAAGATCCAGAAGAAAAAGCAATTGAAGCTGGAGGACAAATATTCGAGCAGTCGGTGCTCCTGTTTAATATTAATGAGAACGGCGAATTGGTGCCAGAAACAGAATGTACTTCTATTGAAGATATTTCAACCATTCGggagtaa
Protein Sequence: MQFGGEIYEINKICRCCLKNIGEMKPLYGFSLDIMLSSVANLQVERSDGLPELLCFQCILQLSRAFRFKEQCLKSDTTIREYIRVSASKPPRSSILSECKFIVEDVNQQIKKDEETISNNAEYQTLYEGDSYSYGSPVDHNELVPISEEKAGIAQNRGCKQSKNNNCNKTEFKCQTCSKKFTHRKQLVRHSKIHDSAKPYKCSECDKTFTEKCNLNKHLLKHTGELRNTSNKRHLCTICGNSFKYSSSLAKHMKFHTGKNLLQCPNCPKYYAERTALEIHLRHHTGDRPYTCHQCDHRFTQASNLRKHLRSHSDERPFKCTICERTFVERSYLAIHMQTHSSEKKTLCSKCGKSFANSKTLKAHMRIHTEERPYLCGFEDCHKAFTRLDTALAHRRIHSGEKPYFCSVCSRSFTTITQLTIHLRTHTGEKLFACELCPKKFASKNNLKMHSIKHVNTQPIDGGQQYTDLSNQQLENEEITFYQDPEEKAIEAGGQIFEQSVLLFNINENGELVPETECTSIEDISTIRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00315379; iTF_00316194; iTF_00311237; iTF_00312019;
90% Identity: -
80% Identity: -