Basic Information

Insect: Cheilosia urbana
Gene Symbol: ZIPIC
Assembly: GCA_946477595.1
Location: CAMLCJ010000042.1:1925382-1927082[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00025 0.042 15.5 6.8 2 23 147 168 146 169 0.95

2 11 0.00091 0.15 13.8 0.0 1 21 233 253 233 254 0.95

3 11 4.7e-08 7.9e-06 27.3 0.4 1 23 262 284 262 284 0.98

4 11 0.12 20 7.1 4.0 3 23 290 311 288 311 0.94

5 11 4.1e-06 0.00069 21.2 0.9 2 23 316 337 315 337 0.98

6 11 1.4e-07 2.4e-05 25.8 0.2 1 23 343 365 343 365 0.95

7 11 1.4e-05 0.0024 19.5 0.3 1 23 372 394 372 394 0.99

8 11 4.1e-05 0.0068 18.0 0.1 1 23 400 422 400 422 0.98

9 11 0.0015 0.26 13.1 4.1 1 23 428 450 428 450 0.98

10 11 0.00027 0.045 15.5 3.7 1 23 456 478 456 478 0.99

11 11 2.3e-08 3.9e-06 28.3 1.1 1 23 484 506 484 506 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00025	0.042	15.5	6.8	2	23	147	168	146	169	0.95
2	11	0.00091	0.15	13.8	0.0	1	21	233	253	233	254	0.95
3	11	4.7e-08	7.9e-06	27.3	0.4	1	23	262	284	262	284	0.98
4	11	0.12	20	7.1	4.0	3	23	290	311	288	311	0.94
5	11	4.1e-06	0.00069	21.2	0.9	2	23	316	337	315	337	0.98
6	11	1.4e-07	2.4e-05	25.8	0.2	1	23	343	365	343	365	0.95
7	11	1.4e-05	0.0024	19.5	0.3	1	23	372	394	372	394	0.99
8	11	4.1e-05	0.0068	18.0	0.1	1	23	400	422	400	422	0.98
9	11	0.0015	0.26	13.1	4.1	1	23	428	450	428	450	0.98
10	11	0.00027	0.045	15.5	3.7	1	23	456	478	456	478	0.99
11	11	2.3e-08	3.9e-06	28.3	1.1	1	23	484	506	484	506	0.98

Sequence Information

Coding Sequence: ATGCTAAGGCAGCTGCTTAATGTTAACGATGAAAAAATAGAACCTATTCAAAAGAAGGAAACTAATATATCAGAAACCATGGAGAGTCTGCCGGAAGAGCAGAAACCGCAGAAGGTAAAAGCCGACACCAGCGTGCGAATACTGAACCAGGAGCCAGCTGAATCGATGGTATCGCAGGAATCTCACGAAATTTATTCTGTACAGAACGAGGACGATCTACAAGAATCTTATATTGTCTTGGATTCAGATGATGATGTTAATGACAATAATGGAGAGAATCAAGGAGACCTTGTGAACAATGTCGAAGGCATTGAAGAATCTGCGGACTTTGAGGAGATACTCCATGAATTCGTTGCGAATCCACCCGAAGAAAAAGAACAAGATGCTGAAGATTATAAACCCGTAAAAAAACATTTGTCTACAAAAAAGACAGAAGTCAAGTGTACGCTATGCCACATGTCCTTTGTCCATCGAACAAATTTAGCCAAACACTTGCAAAAGCATCACAAGATCATTGATCAGGAGCCAGTGATGATTGTTTCCGTCAAAAGTGGTCATTTGGGAGAGGATAACGCTGAGCAGGAAAGTGAGGTTGAAGAATTCCAAGTGGAAAACCACTCAGTCGAAGTCCCTGAAAGCAAGGATGACGAATCACCTGCACTCTTGAAGGAAATGTATCACGAACCTTTGCTCGAACATCGTTGCCCGGACTGTGGAGCCGGATTTGCACTCGAAAAGTCTCTTAATATCCACATTAAGCTGGGTAAATGTACTGAGAAACAATACCCCTGTACAACGTGTAACAAGGTGTTCATATCCCAAGAGAATTTACGCGCTCACGTTCGAACCCACAAGCAGATCAACTGTTGTTATGTCTGTTGCGAGTCATTCACCAGCAAGCAGGAGCTGGAAATGCACAAGCGAGTGGAGCACAAGATGAAAAACCAATGTCCCACTTGCAATAAGGTCTTCAAGTTGGTTTCGACTCTGAAGTACCACATGCGTATTCACAGCGGCGAGAAGCCTTTCCTCTGTCCCATATGCGGAAAAAGCTTCAGCCAGAGTGCCAATCTGAAGGGGCACGTCATGCGGCACAACAAGACGAAGAAGCCGTACAAGTGCGAGCAGTGCTCGCGGTCGTTTGTCAGTGAGGGCGGACTCTTTGTACATGTCCGCAGCCATACAGGCGAACTTCCGTTTGTCTGTGATGTATGTCAGGCATCGTTTACCGCGTCCAGTTCTCTGGCAAATCACAAGCGAATTCATACGGGGGAGCGACCCTACGCGTGCGAATTCTGCCCGATGCGGTTCACCAGGTTACATACGCGAAACAATCACAGACGGACGCACACCGGTGAGAAGCCCTTCAAATGCACTAACTGCCAACGGGGATTCGCGCAGAAGAAAGACTGCGAAGTCCATATGCGAACCCACACTGGCGAGAGACCGTATTTTTGTCAGGTGTGCGGGAAGGCGTTCAAGCGATCGGATGCCCTACGCTCACATATGAAGACCCACAGGGAGTTGAAGGAGGTGCAAGGTGTGACTGAAGACTGGGAAACTCCCGACGACGAGCAGCAAGAGGAGGATGAACCCTCAGAAGAGGAGAAAAAAGACGCCGCGACATTAAGCGAAGACGACCACATGCAGTTCGTCATCGAGGAGTGTTCCAGCGAGAATAACGACTACAGTGGCGAATAG
Protein Sequence: MLRQLLNVNDEKIEPIQKKETNISETMESLPEEQKPQKVKADTSVRILNQEPAESMVSQESHEIYSVQNEDDLQESYIVLDSDDDVNDNNGENQGDLVNNVEGIEESADFEEILHEFVANPPEEKEQDAEDYKPVKKHLSTKKTEVKCTLCHMSFVHRTNLAKHLQKHHKIIDQEPVMIVSVKSGHLGEDNAEQESEVEEFQVENHSVEVPESKDDESPALLKEMYHEPLLEHRCPDCGAGFALEKSLNIHIKLGKCTEKQYPCTTCNKVFISQENLRAHVRTHKQINCCYVCCESFTSKQELEMHKRVEHKMKNQCPTCNKVFKLVSTLKYHMRIHSGEKPFLCPICGKSFSQSANLKGHVMRHNKTKKPYKCEQCSRSFVSEGGLFVHVRSHTGELPFVCDVCQASFTASSSLANHKRIHTGERPYACEFCPMRFTRLHTRNNHRRTHTGEKPFKCTNCQRGFAQKKDCEVHMRTHTGERPYFCQVCGKAFKRSDALRSHMKTHRELKEVQGVTEDWETPDDEQQEEDEPSEEEKKDAATLSEDDHMQFVIEECSSENNDYSGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00315373;
90% Identity: iTF_00314560;
80% Identity: -