Curb012882.1
Basic Information
- Insect
- Cheilosia urbana
- Gene Symbol
- -
- Assembly
- GCA_946477595.1
- Location
- CAMLCJ010000096.1:1988183-2002570[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0083 1.4 10.8 0.6 1 23 114 137 114 137 0.95 2 13 0.015 2.6 9.9 0.7 3 21 144 162 143 165 0.89 3 13 1.3e-06 0.00021 22.8 5.0 2 23 175 197 175 197 0.96 4 13 3.7e-07 6.2e-05 24.5 3.3 1 23 367 389 367 389 0.98 5 13 5.4e-06 0.00091 20.8 1.6 1 23 395 417 395 417 0.97 6 13 0.00012 0.02 16.6 0.3 1 23 423 446 423 446 0.93 7 13 1.3e-07 2.2e-05 25.9 1.1 3 23 458 478 457 478 0.97 8 13 0.033 5.5 8.9 4.7 2 21 484 503 483 505 0.92 9 13 2.5e-07 4.2e-05 25.0 0.7 1 23 511 533 511 533 0.96 10 13 5.1e-05 0.0086 17.7 1.0 1 23 539 561 539 561 0.98 11 13 8.4e-06 0.0014 20.2 0.6 3 23 569 589 567 589 0.96 12 13 9.6e-06 0.0016 20.0 0.2 1 23 595 617 595 617 0.99 13 13 7.7e-06 0.0013 20.3 0.5 1 23 622 645 622 645 0.98
Sequence Information
- Coding Sequence
- ATGGTAGATTTCGATATCGAGAAAATATGCAGAGTGTGCCTGCAGAGCAATATCGAACTTTCGCTAATCTTCGACGAGCGAAATGCTGTCGACAACGTCTGCCTCTCTGATATGATTACGGAGTGCACAATGTACACGGTTCAACGACATGATGATTTTCCACATCTCATATGTGACAATTGCATCGAAAGGGTGCGAAATGCTTATCGATTTAAGAAGCAATTTGAAACGTCTCATCGTAAGCTAATAACCTTTCTGGGTTCGATAAACAAAGTGGTAGTAGATACAAAGCCTAAGAACTCTGTTGACAAATGCATACAAACTGAGGAAACCACACTATATCCGTGTGAGAAGTGTGAGCAGAAATTTTTGAGCTCCCAAAGTCTTAGGAATCACAGATTATTGGCGCATAAAGGAACGGCGAACCTTTGTCGAATATGCTTGAAAACATTCAACCGCGTAACAGATCTTAAGAATCATTTCGCCGCACGCCATCCGGAAATCGGTCATAGATCTCATAACGAATGCCAAGTTTGCGATAGGAGTTTTACACGCAAACACCATTTACTTCGACACATGCGTAATGTCCATAAAACAGGTGTTGAAGCAGGGGAAGATCTCGCAAAAATTGAATATGAAAGCTTAACTGTTCAAGATGGGACCAGCGGTCTTTTATCAAATGACGGCGATCATTACGAAGATAATGTCAGCAGTGGGGCAGAGCCGGCGGGAAATAATCCATTCAGCAGCGACGAAGAGGATGATAAACCGTTATCGACATTACAGAATCTGAACAATTCGGAAACTAAAAGTATAATCAATTCATGTGACCGTACAGTAAAGCTGGAGCCGTTAGATAATTCTGACCTCACCTTGGAGTTCTATGAACGTGCAACGCCATGTTATGCGATGTGTGATAGACCGCATGAAAAGCCAAAGCCTTATCAAAGACTAGAAAACGaTCCAATTCAAATCAAAACGGAGTCAGATGATAAAGTTGATTCAGCCATCTTACAAAAGAACGACGAACCTAATCATACCGATACGGAATGCACGCCATTCAATCCTAAATCTTTCATTAAAATATCAAATCGACAGTTCAAATGCAACGAGTGTGATAAGACATTTACCAGAAGCGGTCACGTAAAACGACATCTTATTtcccacagacaagagaaaccTTTTGCGTGTACAGTATGTGACAAACGATTCGGCAGACCAGATCATTTAAAATTACATCTTACCAAACATGACGACGAAAGACCGTTTCCTTGTGAGATTTGCAATCGAGCTTATGGCCGTGCAGATCTCTTAAAACGtcacaaagaaaataaacacaGTGACGACCCCAAGGCAGGCAAAACGGAAGCTTGTGGAATTTGCAATAAATCATTTAGCACTAAGAGCTATCTGCAAAAGCATTTGCGTTTGCATTccgaaaaaaattggaaatgtAAATTGTGTTCGCATTCGTTTGATTCGAAAGAATCTCTGAAGGAACACGCAAAGTGTCATCTCAAAGAGAAGCCTTTTTTGTGCTCAGAATGTGGTATGTCTTTTGTACGAAATGACTATCTGCGGATTCATATGCGGAGGCACAACGGAGAGAAACCATACAAGTGTAGATATTGTAATAAAGGATTTCCCCGTGGTACCGACTTAAATGTTCACGAGAGATATCATACCGGAGAGAAAACACACTTGTGTACCATTTGTGGCAAGGGATTTCAGCGTGGCTACAATTTGGTTATTCACATGCGCGTGCATACTGGCGAGCGACCATATCAGTGTCCCAGCTGTCCAAAGAACTTCGCTCAGGGCAACGATTTGAAAGCTCACGTCCGAAGGCACACTGGAGAGCGCTATAAATGCGAAGTATGCGGGGCTGGATTTATACAAGCTTACCACCTGACTCAACACAAGCTCACTGTGCATGGAATTAAAGTGGAGACACGAACAGGCAGAGTCACGAAAGTCGATCCAACAATATCGAACGATGTTCCACGAAACGTAAGCGAACTGTAA
- Protein Sequence
- MVDFDIEKICRVCLQSNIELSLIFDERNAVDNVCLSDMITECTMYTVQRHDDFPHLICDNCIERVRNAYRFKKQFETSHRKLITFLGSINKVVVDTKPKNSVDKCIQTEETTLYPCEKCEQKFLSSQSLRNHRLLAHKGTANLCRICLKTFNRVTDLKNHFAARHPEIGHRSHNECQVCDRSFTRKHHLLRHMRNVHKTGVEAGEDLAKIEYESLTVQDGTSGLLSNDGDHYEDNVSSGAEPAGNNPFSSDEEDDKPLSTLQNLNNSETKSIINSCDRTVKLEPLDNSDLTLEFYERATPCYAMCDRPHEKPKPYQRLENDPIQIKTESDDKVDSAILQKNDEPNHTDTECTPFNPKSFIKISNRQFKCNECDKTFTRSGHVKRHLISHRQEKPFACTVCDKRFGRPDHLKLHLTKHDDERPFPCEICNRAYGRADLLKRHKENKHSDDPKAGKTEACGICNKSFSTKSYLQKHLRLHSEKNWKCKLCSHSFDSKESLKEHAKCHLKEKPFLCSECGMSFVRNDYLRIHMRRHNGEKPYKCRYCNKGFPRGTDLNVHERYHTGEKTHLCTICGKGFQRGYNLVIHMRVHTGERPYQCPSCPKNFAQGNDLKAHVRRHTGERYKCEVCGAGFIQAYHLTQHKLTVHGIKVETRTGRVTKVDPTISNDVPRNVSEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -