Curb005693.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cheilosia urbana
Gene Symbol
su(Hw)
Assembly
GCA_946477595.1
Location
CAMLCJ010000043.1:644127-659198[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.033 5.5 8.9 1.3 1 20 124 143 124 145 0.93
2 20 5.5e-06 0.00092 20.8 0.4 3 23 196 217 194 217 0.92
3 20 0.0078 1.3 10.9 0.2 1 23 223 245 223 245 0.97
4 20 0.00028 0.047 15.4 3.9 1 21 252 272 252 273 0.94
5 20 2.3e-05 0.0038 18.8 1.6 3 23 286 306 286 306 0.99
6 20 1.4e-05 0.0023 19.5 5.7 1 23 317 339 317 339 0.99
7 20 1.4e-05 0.0023 19.5 0.7 1 23 345 367 345 367 0.97
8 20 9e-06 0.0015 20.1 0.3 1 23 373 395 373 395 0.99
9 20 1.5e-05 0.0025 19.4 5.0 1 23 401 423 401 423 0.98
10 20 7.3e-05 0.012 17.2 1.5 1 23 427 449 427 449 0.98
11 20 0.00011 0.018 16.7 5.9 1 23 509 532 509 532 0.98
12 20 0.0037 0.62 11.9 5.4 1 21 735 755 735 756 0.94
13 20 1.3e-06 0.00022 22.8 1.3 3 23 769 789 769 789 0.99
14 20 0.0066 1.1 11.1 8.4 1 23 800 822 800 822 0.97
15 20 1.7e-06 0.00028 22.4 1.3 1 23 828 850 828 850 0.97
16 20 0.00056 0.094 14.5 0.4 1 23 856 878 856 878 0.99
17 20 1.5e-05 0.0025 19.4 5.0 1 23 884 906 884 906 0.98
18 20 6.1e-05 0.01 17.5 3.4 1 23 910 932 910 932 0.98
19 20 2.1 3.6e+02 3.2 2.3 2 23 939 962 938 962 0.89
20 20 0.00011 0.018 16.7 5.9 1 23 988 1011 988 1011 0.98

Sequence Information

Coding Sequence
ATGAGCATACGTTTAAGTCAAGCACCCGAAACGATTAGTTCAGATAAGAGTCACGATAGTGGGGCATCCAAAAGAGCTCTGCCTTCAAAGCCGCGTAAGAGTGTGCTACTTTTGAACGCATCGAAAAAATCAAAAGTTTCTAAAAAACCTGAACCAGACTCAGATATTGAATTAGTCAAAGATGATCCAGAGGCGCCAACTCAACATTACCTGataacagaattcaaaagcgatGAGGACCGATCTCCAGACGAAAGTGATCAGCCAGCCGAATGTGTCGAAGAGATCCACTTCAATGAGCTACACAGCGATGAAGGGGGCGATAATAGCGACAGTGAGAACAACATTAACACACGGGAAATTAACGAACACGTCTGTGGCAAGTGTTTCAAATCATTTCGATTGATAAAgGCATTTAAACGTCACCTGGCCTACTGTATTTTTAACAGcgaaatggtattgcgaagagcAGAAATGCAAAAGAACATTGAAAAGATCGAAAAGGAGGCCATTAGCATGGAAAAGAAAGATATCTGTTTCTGCTGCGGCGACAACTACGACACCTGTCACTTGGGCCACATAAACTGCACCGAATGCCCAAAAACCTTTAAGACACAAATCTCGCTTGAACGGCACATGTTTCTTATTCATTCGGAAAAGAATGATTTTCCATGTGATACCTGCAATGGCAGTATTCGAACGAAAGCACTGTTGAAATTACACATGGAGCAACACAAAAACCGTGGCAAGCCGTTTGCTTGCAAAAACTGTGGAAAGGACTTTACACGACTGTTTCAGTTGAACCGCCATCATAAGCACTCCGCGTGTGGTGAGGGATTACCTGAAACTATGGGTTGCAAGGTGTGTGGCAAGAAATTCTTTCTCAAGGACAACTTGCGTGTCCATCTGAGGTCTCATTTGAGTCAGGGTACACCCAGGAAGGCCGAGTATACATGCCCGTGCTGCAAAAAGTGTTTCTCCAGTCTGTCAAATCTAAACATTCACATTCGAACTCATACTGGCGAGCGGCCTTTTGATTGTGATATTTGTGAAAAGAATTTTCCATCGCTGGTCTCGCTGAAGAAGCACAGGAGATCTCACACAGGCGAAAAGCCATACACATGTGATGTTtGTGGCCAAAACTTTGCGGTGAAAGAAGTCCTCAACCGCCACATGAAACGACACACTGGTGAAAAACCACATGTCTGCTTGCATTGCAACAAACGCTTTATTCAAGCCACCCAATTAAAGAACCATTTGCGTACACACGAGCGACCATTTGAATGCACCGAGTGCCCAGAGAAATTCACAACAGAAAAGCAATTTGAGAAGCACTTCGAGACGCACAAATCGAAAAAGGCAAGGAAAGCGTCTTGCGCTTGCGTAGATTGTGAGTTGCAATTTCACTGTCGGGCCGCCCTAACAAGGCACGAGAAGACCGCTCGCCATATTGAAAACGTGAAGAAATTGCGTCCTGAATGTGGCATTAAATGCGACGATCTGAAGTCCCTAGAAACCACTGAATACAAGTGCGATAAGTGCGATTTAACTTTTCGACAACTGCATTTGTTGCAACACCACAAGAAAACCGTTCACAACACGGATCCAGCTAAACCATCATTCGAAATACCCGTTGATGCAGTGAAGAATGAAATGAAAGACTGCATTAAACTTGAGGAATTCCTCGTCGACTCGTTCGCAACAGAAGTGAGTGAGAACGACCAAAAGCAATTCACCGTGATTGCCCAAGAAAATGATGTGTCGCCGGACTTTAAGCAAAGCAAACAGGAGATAAAAAAACTGTCACCCACAGTTCGAGCCGAATTAAAGGAGTCCCTGGTGAATTGTTTGCGCGAAGATCCAACTAAAAAAGCAGTTGAGAATGTCATGAGCGCGGACGATGTGGAAATCAGCGAGAATGTTGATAAATTGCTTGATATGCTAGTAGACGTAGAGACGCTTGGAAAATTTGGATGGCCACAAGATTCTGTTGAGAATgTTCTTTGTAAGGTAATTGAGAACTGTGGCTATAATCTGTACAAGACGAAATTCACCGAGGAATATGGCACAAGGATGAGGGAATATGTCAAACTTATTCATTCGGAAAAGAACGATTTCCCATATGATACCTGCAATGGCAGTATTCCAACGAAAGCACTGTTGAAATTACACATGGAGCAACCCAAAAACCGTGGCAAGCGGTTCGCTTGCAAAAACTGTGGAAAGAACTATACACGACCGTATCGTTTGAAACACCATCATAAGCACTCTGCGTGTGGTGAGGGATTACCTGGAACTATGGGTTGCAAGGTGTGTGGCAAGAAATTCGTTCGCAGGGACAACTTGCGTGTCCATCTGAAGTCTCATTTGAGTCAGGGTACACCACAGAAGGCCGAGCATACATGCCCGTGCTGCAAAAAGTGTTTCTTCAGTCTGTCATATCTAAACATTCACATTCGAACTCATACTGGCGAGCGGCCTTTTGATTGTGATATTTGTGAAAAGAAGTTTCCATCGCAGGAGTCGCTGAAGAAGCACAGGAGATCTCACACAGGCGAGAAGCCATACACATGTGATGTTtGTGCCCAAAAGTTTGCGGCGAAAGAAGTCCTCAACCGCCACATGAAACGACACACTGGTGAAAAACCACATGTCTGCTTGCATTGCAACAAACGCTTTATTCAAGCCACCCAATTAAAGAACCATTTGCGTACACACGAGCGACCATTTGAATGCACCGAGTGCTCAGAGAAATTCAAAACAGAAAAGCAATTTGAGAAGCACTACAAGACGCACAAATCGAAACCGTCTTGCACTTGCGTAGATTGTGAGTTGCAATTTCCCTGTCGAGCCGCCCTAACAAGGCACGAGAAGACCGCTCGCCATATTGAAAACGTGAAGAAATTGCGTCCTGAATGTGGCATTAAATGCGACGATCTGAAGTCCCTAGAAACCACTGAATACAAGTGCGATAAGTGCGATTTAACTTTTCGACAACTGCATTTGTTGCAACACCACAAGAAAACCGTTCACAACACGGATCCAGCTAAACCATCATTCGAAATACCCGTTGATGCAGTGAAGAATGAAATGAAAGACTGCATTAAAGTTGAGGAATTCCTCGTCGACTCGTTCGCAACAGAAGTGAGTGAGAACGACCAAAAGCAATTCATCGTGATTGCCCAAGAAAATGATGTGTCGCCGGACTTTAAGCAAAGCAAACAGGAGATAAAAAAACTGTCACCCACAGTTCGAGCCGAATTAAAGGAGTCCCTGGTGAATTGTTTGCGCGAAGATCCAACTAAAAAAGTAGTTGAGAATGTCATGAGCGCGGGCGATGTGGAAATCAGCGAGAATGTTGGTAAATTGCTTGATATGCTAGTAGACGTAGAGACTCTTGGAAAATTTGGCTGGCCACAAGATTCTGTTGAGAATgTTCTTTGTAAGGTAATTGAGAACTGTGGCTATAATCTGTACGGGACGAAATTCACCGAAGAATACGGCACAAGGATGAGGGAATATGTCAAACTTATGTTTACCGTGGTCATACAAAATGATTCATTCAAGGAGCTCTTGAATAATTATCCAATCGATGAAGTTATTGCGATTGTGCTTTCCAATGAAGACGACGAGttgaaattgtaa
Protein Sequence
MSIRLSQAPETISSDKSHDSGASKRALPSKPRKSVLLLNASKKSKVSKKPEPDSDIELVKDDPEAPTQHYLITEFKSDEDRSPDESDQPAECVEEIHFNELHSDEGGDNSDSENNINTREINEHVCGKCFKSFRLIKAFKRHLAYCIFNSEMVLRRAEMQKNIEKIEKEAISMEKKDICFCCGDNYDTCHLGHINCTECPKTFKTQISLERHMFLIHSEKNDFPCDTCNGSIRTKALLKLHMEQHKNRGKPFACKNCGKDFTRLFQLNRHHKHSACGEGLPETMGCKVCGKKFFLKDNLRVHLRSHLSQGTPRKAEYTCPCCKKCFSSLSNLNIHIRTHTGERPFDCDICEKNFPSLVSLKKHRRSHTGEKPYTCDVCGQNFAVKEVLNRHMKRHTGEKPHVCLHCNKRFIQATQLKNHLRTHERPFECTECPEKFTTEKQFEKHFETHKSKKARKASCACVDCELQFHCRAALTRHEKTARHIENVKKLRPECGIKCDDLKSLETTEYKCDKCDLTFRQLHLLQHHKKTVHNTDPAKPSFEIPVDAVKNEMKDCIKLEEFLVDSFATEVSENDQKQFTVIAQENDVSPDFKQSKQEIKKLSPTVRAELKESLVNCLREDPTKKAVENVMSADDVEISENVDKLLDMLVDVETLGKFGWPQDSVENVLCKVIENCGYNLYKTKFTEEYGTRMREYVKLIHSEKNDFPYDTCNGSIPTKALLKLHMEQPKNRGKRFACKNCGKNYTRPYRLKHHHKHSACGEGLPGTMGCKVCGKKFVRRDNLRVHLKSHLSQGTPQKAEHTCPCCKKCFFSLSYLNIHIRTHTGERPFDCDICEKKFPSQESLKKHRRSHTGEKPYTCDVCAQKFAAKEVLNRHMKRHTGEKPHVCLHCNKRFIQATQLKNHLRTHERPFECTECSEKFKTEKQFEKHYKTHKSKPSCTCVDCELQFPCRAALTRHEKTARHIENVKKLRPECGIKCDDLKSLETTEYKCDKCDLTFRQLHLLQHHKKTVHNTDPAKPSFEIPVDAVKNEMKDCIKVEEFLVDSFATEVSENDQKQFIVIAQENDVSPDFKQSKQEIKKLSPTVRAELKESLVNCLREDPTKKVVENVMSAGDVEISENVGKLLDMLVDVETLGKFGWPQDSVENVLCKVIENCGYNLYGTKFTEEYGTRMREYVKLMFTVVIQNDSFKELLNNYPIDEVIAIVLSNEDDELKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-