Curb040346.1
Basic Information
- Insect
- Cheilosia urbana
- Gene Symbol
- -
- Assembly
- GCA_946477595.1
- Location
- CAMLCJ010000935.1:605624-606898[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4e-09 2.6e-06 28.3 0.0 3 37 13 47 11 52 0.90
Sequence Information
- Coding Sequence
- ATgcctaaaaaagaagaaatcagGAAATGGGACAAAGCTGATATGGAGAAGGCCATCAAAGCAGTCAGAGACGGACAAATGGGTATATTGCTGGCATCTAAAACGTTTTTAGTTCCTCACACGACGCTGCAGAGAATGGCAAGAAGTGAAAAACCCATTGACCATCTGCTTTTAAGCAAATTGGGTCGAAAGCCAGTATTTAATGAAGCTATTGAAAATCAGCTTGTAGACTATGCACTGGATATGGAAGCTCGTTTCTGGGGCCTTACAAGACGCGACATAAGATCACTAGCATTTCAAATAGCGAAGgtaaataaaatacctaataTGTTCTCAGTTTTAAAGGAGTGTGCAGGGAAAGACTGGTTTTATGGGTTTTGCCGAAGACACAAGGGAAGGTTGAGCTTGCGAACGCCAACAGGTACGTCTTTTGATCGAGCTAAAGGGTTTAGTCGCAAAAACGTGGAAATATTTTATAACTTGCTCGAACAGGAATACGAAAAATGTAACTATCCGGCTGGTCGCATTTGGAACGTCGATGAAACTGGGCTAAGCATTGTTCAAACCAAACAACCAAAAGTGTTAGCGCGAAAAGGAAAGCGACAGATAGGTGCCATGACATCGGCTGAACGAGGTTCACTTATAACTGTAGTAAATTGCATGAGTGCAGGTGGAAGTTTTATCCCACCATATTTTATCTTTCCGAGAAAAAATCAGCATCCTCTTCTAATGAAAGAAGCAACTCCTGGCGCGAAGTCTTCGTGTCATATATCTGGATGGATACAAGTCCCCATATTTACAGAATGGTTTAAACACTTTTTGTCTCAGGCGAAACCCTCAAAAGAGGACCCAGTTCTCCTTATATTGGATGGGCACTATAGTCACACAAGAAATATTGAGGTGTTGGATCTTGCACGCGAAAATGGAGTGGTTATCATTTCATTGCCACCGCACTCAACCCATAAAATGCAGCCGTTGGATAAAACATTCATGGGACCtttaaaagttttttataaCGATGAAATTAGACGTTTTACACGTGAAATGGGACGAAAAGTAACCCAATATGATTTGGTGGGCCTTTTCTCAAAAGCGTATTTGAAGGTACAAACTGGTCAAATTGCTATCACAGCTTTAAGTGCACTGGAATTTATCCATttgataaaaacattttttcggaAGCAGATTTCATTGCTGCCGAAATTGAAGGAGAAGAAGCAGCTGCAAAGAAAGAAACTACACCGAGCACTGAACTCTTTGCCCAATTTGAAATAG
- Protein Sequence
- MPKKEEIRKWDKADMEKAIKAVRDGQMGILLASKTFLVPHTTLQRMARSEKPIDHLLLSKLGRKPVFNEAIENQLVDYALDMEARFWGLTRRDIRSLAFQIAKVNKIPNMFSVLKECAGKDWFYGFCRRHKGRLSLRTPTGTSFDRAKGFSRKNVEIFYNLLEQEYEKCNYPAGRIWNVDETGLSIVQTKQPKVLARKGKRQIGAMTSAERGSLITVVNCMSAGGSFIPPYFIFPRKNQHPLLMKEATPGAKSSCHISGWIQVPIFTEWFKHFLSQAKPSKEDPVLLILDGHYSHTRNIEVLDLARENGVVIISLPPHSTHKMQPLDKTFMGPLKVFYNDEIRRFTREMGRKVTQYDLVGLFSKAYLKVQTGQIAITALSALEFIHLIKTFFRKQISLLPKLKEKKQLQRKKLHRALNSLPNLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00310971;
- 90% Identity
- iTF_00314216;
- 80% Identity
- -