Curb008098.1
Basic Information
- Insect
- Cheilosia urbana
- Gene Symbol
- br
- Assembly
- GCA_946477595.1
- Location
- CAMLCJ010000058.1:946036-947469[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.1e-14 3.3e-11 44.0 0.0 3 43 312 352 310 354 0.91 2 3 0.045 29 5.7 0.0 27 37 383 393 374 398 0.87 3 3 4e-17 2.6e-14 53.9 0.0 3 42 421 460 419 462 0.93
Sequence Information
- Coding Sequence
- ATGAATCACCTCAAATGGATGGGCCATACGGCGACCATCCTGGATATCCAAAAGACTCTTAAAAATGATCCCGTCAATTGTGATATTACGCTTTCATGTCGGGGTAAATCGGTGAAAGCACATCGCTTCATACTATCTTCATGTAGTGACCTACTGCGTGATCTCCTTAGTGATGTCCCTGTCGGACAGGAAGCTACAATAATAGTGCCAGATGTGAAAGGCTGTCTGCTGGACAGTGTATTGGGCTTCGTGTACATGGGCGAGACGAGTTTATCATCAACAAACTTGTCTGAATTTCTTGAAGCCATTAGCATACTAGGTATCAAAAGCGCTATTAGCTTTGAATGTGCAAACAGTAGTTCGGCAAGTAATATCAAAAATGTTGCCGAAATGACAGAAATGGAAGAGGAACTAATGGAAGCCGAACCGGAGCAGGAAATTGTTGAAAAGGACGACGAAGAGGTACGTACCTTATCTTTGCTGTTTAAATGCATaactatatttttatataatttcgcTATCTTTATCTCACAGGACCAAGTGGTTGCTGAAAACAACAGCGTCCGCGAGTTGGAATTTCTTGAGGTCTATAATGATCAAGAGAAAATTAGCTACACCATCGAGAACATCATACCGACCAATCCCAACGAATATATCCTTACCGAGAGTTCTGGCACCTTCACACTAACGCCAAACGCAAAAATCGATGGCAATGAAGCGGGAGCTCTTGTCGAAAAACAAGATGAGGATAACCCAATGCTGGAGCATTATGTGGGTGACCCAATAGGTGACAGCAGTCAATGTTCAAGCACAGATATGAAAGACGACAAGAGCAGCAAAAAACTAAAAGACGAATTTAGTGAATTTCAAGCTCTTAGTCCGGATGACAGCAAGGGATATCAGAACTTTAATGAAACGCAATCCGCCCGCGTCGAAGCACTGGAAAATGCAGTTTTAGCTGTTGTCGATGAGGGAATGAGTCTACAGAAGGCTGCCATCAAGTATAACATTTCAAAGACAGTCCTTTGGCGTCGTGTAAAAAAACATCCGCTCTACATGAAGACGACTCGAGAGAATCCCGTTATAACAGCAGCATGTGAACGTCTTAAAAGTGGCGACTCACTTAAAAGTATTAGCCAAGCATTGGACATACCCATGTCTACTTTGCATCGGCACAAGGTGAGGCTGGCACAGGAAGGACGGCTACCAGAGTATGTTACTTTTAAGAAACGTGGTCCAATGTCAAAGGAAATGCTAAAAGAGAAGCTCACAAAGGCTGTCCAAGCATGCCTAGGCAATGGAATGTCGCAAAATCATGCAGCAAATGTGTTCGATGTGCCAAAGAGCACATTGTGGCGACATTTGCAAAAGAAAATGAGCCGCACGGAAGCTGACAGCGAAGTAAACATTAAAGAGGAAGTGGTTTTACCATAG
- Protein Sequence
- MNHLKWMGHTATILDIQKTLKNDPVNCDITLSCRGKSVKAHRFILSSCSDLLRDLLSDVPVGQEATIIVPDVKGCLLDSVLGFVYMGETSLSSTNLSEFLEAISILGIKSAISFECANSSSASNIKNVAEMTEMEEELMEAEPEQEIVEKDDEEVRTLSLLFKCITIFLYNFAIFISQDQVVAENNSVRELEFLEVYNDQEKISYTIENIIPTNPNEYILTESSGTFTLTPNAKIDGNEAGALVEKQDEDNPMLEHYVGDPIGDSSQCSSTDMKDDKSSKKLKDEFSEFQALSPDDSKGYQNFNETQSARVEALENAVLAVVDEGMSLQKAAIKYNISKTVLWRRVKKHPLYMKTTRENPVITAACERLKSGDSLKSISQALDIPMSTLHRHKVRLAQEGRLPEYVTFKKRGPMSKEMLKEKLTKAVQACLGNGMSQNHAANVFDVPKSTLWRHLQKKMSRTEADSEVNIKEEVVLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311727;
- 90% Identity
- iTF_00316154;
- 80% Identity
- iTF_00314519;