Csor025126.1
Basic Information
- Insect
- Cheilosia soror
- Gene Symbol
- zfh1
- Assembly
- GCA_948107745.1
- Location
- OX443564.1:69437594-69439661[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.006 0.7 11.1 2.8 3 23 215 235 213 235 0.97 2 12 1.3 1.5e+02 3.8 0.1 2 10 241 249 240 263 0.89 3 12 0.097 11 7.3 1.1 2 15 270 282 270 288 0.78 4 12 0.00017 0.02 16.0 1.5 2 23 300 321 299 321 0.97 5 12 0.00019 0.022 15.9 2.6 1 23 327 349 327 349 0.96 6 12 0.00048 0.056 14.6 0.2 2 23 355 376 354 376 0.96 7 12 0.0023 0.27 12.4 3.3 2 23 385 407 384 407 0.92 8 12 0.00011 0.013 16.6 1.4 1 23 432 454 432 454 0.99 9 12 1.3e-05 0.0015 19.5 6.4 1 23 460 483 460 483 0.95 10 12 0.00011 0.013 16.6 4.5 1 23 489 512 489 512 0.93 11 12 1.2e-05 0.0014 19.7 0.6 1 23 518 540 518 540 0.98 12 12 0.00019 0.023 15.8 1.0 1 23 546 568 546 568 0.98
Sequence Information
- Coding Sequence
- atgagTGTCGTGGATAATACTTGCAGAACGTGTGGTAAAGCGTCTGAACAGGAAGATTGCTCGGATCTTCATCCAATGTACACTTCAGTCGAGTACcataatgagttaaaaatggTTCAAGAGGAATTTGAAATATGGAATCTTAATATTGCCCAAAGTGACGGCCTACCTCAGAAAAtttgtctcacttgttttgatAGTTTCTGTCAGATTCACAACTTTCGCTTGATATGCCAGGAGGCGCAGATGAATTTCGGTGAACTATGCACTGGGTTGGACATCATAATAAAGCTTGAACCCGAAAATGGCGATGTCGATGATGTTGACTACCCAGAAGACTTTGAGGGTGAGCAGACGATCACTGTTCAAGAGCACTACAGCTTTCCCGGCGATGATCAGTCAAAATTATCAGATCCTCTTCAGGAAGAGAAATCTTGTGAAAAACTTTTGGAGACTCTTGATTCGGAGGAAGAGTACCGAATAGAGCGAGAACGTAAAGATGACCTTGAGGAGCAGAATGCTGTTCTTCCcgagttcaaaaattatcaATGCCAGTTCTGTATGAACTTTGTGGGCTTCGATAATCTAGAGCTCCTTAATAAGCATTATAATCTTAAGCACTCTACGGATCTTCCTTATGGGTGTCCTAAATGTGAAAAGTGCTTCGACACCAAAAGAAAGCAGTACAGCCATGCCAGAGTTCATTACCGGAAAGTAGTGGAGTGCACAATCTGCGGTAAAAAGGTTCGCGGTGGTAAGCGGATGATGGCTGCACACACTGAGCTGCATCATGTTGAGAAGGATCGCGAATGCACCACATGCggcaaaaagtttacgaaaatcTCCCTTAAGAAATTCCATTACCATTTGGGTTGGCATGATGATGCCAAACTCCAGAAGTGCAAATTCTGCCCCAAAAAGTTCATCCAAGTCAACCATTTGGTAGCCCACGAAAGGATACACACAGGAGAGCATCCCTATCTTTGCAGTGAGTGTGGAATGGGATTTAAACACTCCAATCTTATGTACAATCATATGAAAAAGCACGGAAAGGGCAATATTTCCTGTACTGTATGCGACGAAACATTTTTCAACCTCAATGGCTACAAGCTTCACATGATTATGCATAACCGTCATGGAGGAAATGTAACTCGATGCGATCTGTGCGATAAGACTTACAGCAATGTGACGAATTTGCGTTTACACAATCACAAAAAACATGGTGAACCAGCTACGCCGACAGTGCAAAAAATCTTGCAAAAATCTTCAATGAAAAAAGTATTTATCAAACCATACAAATGCGCAAAGTGCCCGGAATCGTTTGTGTTACACCAACAGCTTTTAAAGCATCTAAAAATACATGACGAAATTAGACCGTACAAGTGTGATCGATGTCACAAGTCATTTAAACGTAAGGTTCATTTGAACATACACATCAATTTTACACACTTGAGGAAGAAGCCACACAAATGTACAGTTTGCGAAAAGACATTTACACAGGCAAACCATCTTCGAGAGCACTTTGCCTCAAAGCATGGAGACAAGAGAGACTTCAAATGCACTATATGTGGTGCCGCTTTTGCCGTTGCCAAGTGTCTTAGGAATCATATGATCAAGCACAGAGATACGAAACCTTTTACATGTACAATATGCAATCGGAGTTTTATCGCATTAACCTTTCTAAAAAATCATGTCAACTCCCATCTGAAGAAGAACGAAGCTGATGTCGCAGGAGGAGATATTACCGATATCGTTGTAACTACAAACTGA
- Protein Sequence
- MSVVDNTCRTCGKASEQEDCSDLHPMYTSVEYHNELKMVQEEFEIWNLNIAQSDGLPQKICLTCFDSFCQIHNFRLICQEAQMNFGELCTGLDIIIKLEPENGDVDDVDYPEDFEGEQTITVQEHYSFPGDDQSKLSDPLQEEKSCEKLLETLDSEEEYRIERERKDDLEEQNAVLPEFKNYQCQFCMNFVGFDNLELLNKHYNLKHSTDLPYGCPKCEKCFDTKRKQYSHARVHYRKVVECTICGKKVRGGKRMMAAHTELHHVEKDRECTTCGKKFTKISLKKFHYHLGWHDDAKLQKCKFCPKKFIQVNHLVAHERIHTGEHPYLCSECGMGFKHSNLMYNHMKKHGKGNISCTVCDETFFNLNGYKLHMIMHNRHGGNVTRCDLCDKTYSNVTNLRLHNHKKHGEPATPTVQKILQKSSMKKVFIKPYKCAKCPESFVLHQQLLKHLKIHDEIRPYKCDRCHKSFKRKVHLNIHINFTHLRKKPHKCTVCEKTFTQANHLREHFASKHGDKRDFKCTICGAAFAVAKCLRNHMIKHRDTKPFTCTICNRSFIALTFLKNHVNSHLKKNEADVAGGDITDIVVTTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -