Csor013723.1
Basic Information
- Insect
- Cheilosia soror
- Gene Symbol
- su(Hw)
- Assembly
- GCA_948107745.1
- Location
- OX443562.1:89005924-89015714[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.012 1.4 10.2 1.6 1 20 591 610 591 612 0.93 2 13 6e-06 0.0007 20.6 0.4 3 23 663 684 661 684 0.92 3 13 0.029 3.4 9.0 0.0 1 23 690 712 690 712 0.97 4 13 0.00016 0.019 16.1 5.7 1 21 719 739 719 740 0.94 5 13 4.7e-05 0.0055 17.8 1.1 3 23 753 773 753 773 0.98 6 13 0.00029 0.034 15.3 6.2 1 23 784 806 784 806 0.99 7 13 7.7e-06 0.00091 20.2 0.9 1 23 812 834 812 834 0.97 8 13 4.7e-06 0.00055 20.9 0.3 1 23 840 862 840 862 0.99 9 13 1.4e-05 0.0016 19.4 5.0 1 23 868 890 868 890 0.98 10 13 9.9e-06 0.0012 19.9 2.4 1 23 894 916 894 916 0.99 11 13 0.0025 0.3 12.3 0.0 2 23 927 950 926 950 0.91 12 13 0.93 1.1e+02 4.2 1.9 3 23 958 979 957 979 0.95 13 13 0.0015 0.18 13.0 5.8 1 23 984 1007 984 1007 0.96
Sequence Information
- Coding Sequence
- ATGCAAATTCGGTGGGATGATATTTATTCCATGACATCCGTAAACCAGCAAGTATCATTTCTGGAGCAAAATATAAAAGCACTATTTGATCAGTATGTTCCATTGCGACATAGGGCCCCTATTTCCAGATCCCCCCCTTGGTTTAATCGATATTTATTAGAGCTGATCCATAATCGTGATACCGCGTACGCTCGTTGGAAACGATACAAACTCCCTGTACTCTACGACACATATCGGTCACTTCGCAACTTAGTTGTCCTTCGTGTAAGGGCTGCAAAGCGACGCCACTACGAACATTTCCTTAACCCTGAAATTCAATCCGGGAAAGTTCTCTGGCAAAAACTGCGTAAACTAGGCAATGGGAAGCAGCGTTCAGGTGCAAATGATGACATAGACTGTAATGTTCTCAATTCGGAGTTCGTGTCGGTCTCTGTGCCGTCAATCCCATATCAAGACTCAACACAGTTTACAAATCCGTCTAACGACGATGACAATACAGAAAGCTTCAGCTTTAATCGCCTAACGGATGAAAATGTAGTCGAGGCCGTGCTATCGGTTAAATCTGACGCGACAGGTTTGGATGAAATAAAtcctaaatttttaaaacttctgCTTCCTTTCATTCTCAAATGCATAACACATATTTTCAATCACATATTTACCACCTGTGAATACCCCCTTTCGTGGAAAAAAGCTAAGATATTACCGATACCTAAGTCGCAAAGCCGGACTAACACTGAGTATAGACCAATCGCAATCTTACCATTTTTATCCAAAGTATTCGAGAAAACCACGCTAAAGCAGATCCAAGCGCACTTAAGCGCCAACAACCTTTTGACCTCCGCTCAATCCGGATTTCGCGCGAAGAGGAGTTGCAAAACTGCACTCTTACTTGTTGTCGACGACATCCGCATTGGCCTGGATACTAACTGTCCTACGTTCCTGACGTTGTTGGACTTCTCGAAAGCGTTTGACACAGTGGACCACTCTCTCCTTTGTAAGAAGTTGCGGTATGAATTTGGATTTTCGTCTCTGGCAGTCAAACTCTTGCACTCATACCTTTCGGGCCGGCAGCAATGTGTGGCAGTGGGAAACCAAATGTCTTCGTTTCTTAGAGTTCCCGCGGGAGTTCCGCAGGGTTCGATTCTAGGGCCCATATTATTTTCACTTTATGTGAACGAACTTCCTCGGCTTGTTAAACATTGTACTGCCCATATGTTCGCTGACGACGTCCAATTATACTTGTGCTGCCCGCTGGATATGATTAGTAATGCGATCGAACTGATGAACGAAGATCTAGAGATCATACAACAGTGGGCCCTCAAACACAACCTATCACTGAATCCAGCGAAGTCTAAGACGCTCTGTATTTATAAGCAGTCTCTAGATACTACCACATTTCCCCCGATTAAATTAGGACAGTCATCCATTGAATACGTCACGAAGTCTCGAAATCTTGGTATAGTTTTCAATGATACTCTTACCTGGACAGATCATGCTGCAACTACCATTGGGAAAAAACCTGAGCTAGACTCGGAAATTGAATTTGTTAAGGATGATCCGGAGGCACCAACTCAACACTATTTGATAACAGAATTCAAAGGAGATGAAGAGAATGAAATTGATCTTGTATTAACACAAAATCGGACTTCAGACAAAAGCGATCAACCAGCTGAATGCGTCGAAGAGATTCATTTCGATGAGCTACATGGCGATGATGGAGGCAATAATAGCGATGGCGAAAACGTTAATACACGGGAAATTATCGAACATGTCTGTGGCAAGTGTTTCAAATCGTTTCGTTTGTTAAAGGCATTTAAACGTCATCTGGCGTATTGTATTTTTAACAGCGAAATGGTATTGCGGAGAGCAGAAATGCAAAAGAACATAGTAAAGATCGAGAAGGAGGCAATTGCCATGGAAAAGAAAgacatttgtttttgttgtggCGACAACTATGATACCTGCCACTTGGGCCACATAAACTGCTCCGAGTGCCCGAAAACCTTTAAGACACAAATATCGCTTGAACGCCATATGTTCCTTATTCATTCGGAAAAGGGCGATTTCCCATGTGACATCTGCAATGGTAGTATTCGCACGGAAGCATTGCTCAAATTGCACATTGAGCAACACAAAAACCGCGGCAAGCCGTTTGCTTGTAAAACCTGCGGAAAAGATTTTACGCGACTGTATCATTTGAAACGGCATCATAAACACTCGGCATGTGGTGACGGATTACCTGAAACTATGGGTTGTAAGGTTTGTGGAAAAAAATTCTTCCGGATGGACAACTTGCGTGTCCATCTGAAGGCACATTTGGGTCAGGGTACACCCAAGAAACCCGAGTACACATGCCCATGCTGCAAGAAGTGCTTCTACAGTTTGTCAACTCTAAACATTCACATTCGAACTCATACTGGCGAACGTCCTTTTGATTGTGATATTTGTGACAAGAATTTTCCATCGTTGGTCTCGCTGAAGAAGCACAGGAGATATCACACAGGCGAGAAGCCATACACATGTGAAAtttGTGGCCAAAACTTTGCGGTCAAAGAAGTCCTCAACCGCCACATGAAACGACACACTGGTGAAAAGCCACATGTCTGCTTGCATTGCAATAAACGCTTCATCCAAGCTACCCAACTGAAAAACCATTTGCGCACACACGAGCGACCATATGAATGCACCGAGTGCCCTGAGAAATTCAAAACTGAAAAGCAATTTGAAAAACATTACAAGACGCACAAAACGAAAAAGGCTCATAAGGATTCTGTCACTTGCGCTGATTGTGAAATGGAATTTGCCAGTAAATACGCCCTAGCAAAGCATGAGAAGACCGCTGCCCATATTGaaaatgtAGCAAAATTTTGTACTGAATGTGGCATTAAATGCGACGACATGAAGTCCCTAGAATTCCATATGCTTAAAAGTCATGAAAACACTGAATATAAGTGCGATAAGTGCGATTCCACTTTTCGGCAACTCCATTTGTTACAACATCACAAGAAAAATGCCCACAGCACGAGTCCACATACACAATCATTCGAAATATCTGTAGATACAGTGAAGAATGAAGCGAATAACTGCATTATCCTTGAGGAATACATCGTAGATTCGTTTGCAACAGAAGTGAGTGAGAGCGACCAAAAGCAATTCACTGTGATTGCCGAAGATAATGAGGTGTCTCCGGACTTTAAGGAAAgcaaccaaaaaataaaaaagaaatcacCAACAGTTAGAGCCGAACTTAAAAAGTCCCTAGTGAATTGTTTGCGCGAAGATCCAGCGGAGAAAGTAGTTGAGAATGCCATGAGCGCGGACGATGTAGAAATCAGCGAGAATGTTGGTAAATTGCTTGATTTGCTAGTAGATGTAGAGACGCTTGGAAAATTTGGCTGGCCACAGGATTCTGTTGAGAATgttcTTTGTAAGGTGATTGAGAACTGTGGCTATAATCTGTACCAGACGAAATTTACTGATGAATACGGCACCAGGATGAGGGAATATGTCAAACTTATGTTCACCGTCGTCATACAAAATGATTCAATCAAGGAGCTCTTGAACAACTATCCAATTGATGAGGTTATAGCGTTTGTTCTCTCCAATGAAGACGACGAGTTGAAATTGTAA
- Protein Sequence
- MQIRWDDIYSMTSVNQQVSFLEQNIKALFDQYVPLRHRAPISRSPPWFNRYLLELIHNRDTAYARWKRYKLPVLYDTYRSLRNLVVLRVRAAKRRHYEHFLNPEIQSGKVLWQKLRKLGNGKQRSGANDDIDCNVLNSEFVSVSVPSIPYQDSTQFTNPSNDDDNTESFSFNRLTDENVVEAVLSVKSDATGLDEINPKFLKLLLPFILKCITHIFNHIFTTCEYPLSWKKAKILPIPKSQSRTNTEYRPIAILPFLSKVFEKTTLKQIQAHLSANNLLTSAQSGFRAKRSCKTALLLVVDDIRIGLDTNCPTFLTLLDFSKAFDTVDHSLLCKKLRYEFGFSSLAVKLLHSYLSGRQQCVAVGNQMSSFLRVPAGVPQGSILGPILFSLYVNELPRLVKHCTAHMFADDVQLYLCCPLDMISNAIELMNEDLEIIQQWALKHNLSLNPAKSKTLCIYKQSLDTTTFPPIKLGQSSIEYVTKSRNLGIVFNDTLTWTDHAATTIGKKPELDSEIEFVKDDPEAPTQHYLITEFKGDEENEIDLVLTQNRTSDKSDQPAECVEEIHFDELHGDDGGNNSDGENVNTREIIEHVCGKCFKSFRLLKAFKRHLAYCIFNSEMVLRRAEMQKNIVKIEKEAIAMEKKDICFCCGDNYDTCHLGHINCSECPKTFKTQISLERHMFLIHSEKGDFPCDICNGSIRTEALLKLHIEQHKNRGKPFACKTCGKDFTRLYHLKRHHKHSACGDGLPETMGCKVCGKKFFRMDNLRVHLKAHLGQGTPKKPEYTCPCCKKCFYSLSTLNIHIRTHTGERPFDCDICDKNFPSLVSLKKHRRYHTGEKPYTCEICGQNFAVKEVLNRHMKRHTGEKPHVCLHCNKRFIQATQLKNHLRTHERPYECTECPEKFKTEKQFEKHYKTHKTKKAHKDSVTCADCEMEFASKYALAKHEKTAAHIENVAKFCTECGIKCDDMKSLEFHMLKSHENTEYKCDKCDSTFRQLHLLQHHKKNAHSTSPHTQSFEISVDTVKNEANNCIILEEYIVDSFATEVSESDQKQFTVIAEDNEVSPDFKESNQKIKKKSPTVRAELKKSLVNCLREDPAEKVVENAMSADDVEISENVGKLLDLLVDVETLGKFGWPQDSVENVLCKVIENCGYNLYQTKFTDEYGTRMREYVKLMFTVVIQNDSIKELLNNYPIDEVIAFVLSNEDDELKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -