Csor014697.1
Basic Information
- Insect
- Cheilosia soror
- Gene Symbol
- -
- Assembly
- GCA_948107745.1
- Location
- OX443562.1:111171059-111171773[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.4e-08 3.8e-05 24.0 0.0 3 40 16 53 14 58 0.90 2 2 2.9 1.7e+03 -0.5 0.0 25 31 92 98 86 102 0.79
Sequence Information
- Coding Sequence
- ATGCCAAGAAGTAGGTCTGGAATTAAAAGACCGAATGTGGACATTGATGCTTTACGGCGTGCTCTGGAAGAAGTAGTGGATAATGGAAAATCCATGTATACCGCAGCAAAGATGTTCAACATCTCCAAAACCACGTTAATGCGTCATATAACCAAGCACAAGGGATCGAATAACTCTTCTTTTGTTTACGAGAATCAAATCAACCACCGCCAGATATTTTCGCCTGAAGAAGAAGACCTCCTAGCAGAGTATGTGATAAAGGCTTCCAAACTCCACTACGGACTACCCAGGTCGGAATTAAAGAAATTGGCTTTCCACTTTGCggaaaaaaataacaagcaAATTCCCAAAAACTGGTTCGAACAGGGCGCAGCCGGCAGGAACTGGCTTAAATTGTTTCTTAAGCGCCACCAAACGATTGCTCTGAGAAAACCCGAAGCCACCAGCCTTTCTAGAGCTACTAGCTTTAACGAGGCCAACGTgaaaactttctttcaaaattacAAAGATTGTTTATCCCGATATCACTTTTCACCTGAGCTAATATTCAATACTGATGAAACAgGTAATTCTACAGTTCATGTTCAACATCAAGATCCGCAGCTGCTTTTTCAGATGAGGTCCCAAAAGAGATTATTTCACCAATACAAATAA
- Protein Sequence
- MPRSRSGIKRPNVDIDALRRALEEVVDNGKSMYTAAKMFNISKTTLMRHITKHKGSNNSSFVYENQINHRQIFSPEEEDLLAEYVIKASKLHYGLPRSELKKLAFHFAEKNNKQIPKNWFEQGAAGRNWLKLFLKRHQTIALRKPEATSLSRATSFNEANVKTFFQNYKDCLSRYHFSPELIFNTDETGNSTVHVQHQDPQLLFQMRSQKRLFHQYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315111;
- 90% Identity
- -
- 80% Identity
- -