Csor009876.1
Basic Information
- Insect
- Cheilosia soror
- Gene Symbol
- -
- Assembly
- GCA_948107745.1
- Location
- OX443562.1:22733229-22733915[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-08 9.3e-06 25.9 0.0 2 40 15 53 14 56 0.89 2 2 4.1 2.5e+03 -1.0 0.0 4 12 159 167 157 169 0.86
Sequence Information
- Coding Sequence
- ATGCCTCGCAGCAAGGAAGGTGTTAAAAGAACTCCTTTGGATGAAAATGCCTTACAGGAAGCTATTAACGATGTTCTCTACAATAAGGAAACAATCGGCAGAGCTGCAAAAGACCACGGTATTTCCAAAACAACTTTGTTTCGTCATCTTCAAATGCATCGGAAATCTGGCGATGCAACGTTCAAATACAGCTGGCAAAGAGTGGATGATTGGCTTTTTTGGCACCAAACTTTATCACTCAGAAAGCCAGAGTCGACCAGCTTTTCCAGATCAACCAGTTTTAACCGCTGCAATGTGGGACAATTTTTTACCAATTTGGAAGATTGCTATTCCCGTTTTAAATTTTACCCAAGTAGAATTTACAATCTTGACGAAACTGGAAATTCAACGGTTTACGTCCCACCGAAAGTTTTAGCTGCCAAAGGTGAAAAACAAATAGGAAGCATGACCTCGGGAGAAAGAGGAATAAATGTCACCATGGTCGCGGCTATTAATGCAATAGGAAATCATGTTCCGCCGATGTTGATATTCCCCAGAGTTCATTTCAAGGAACATATGCTTAACGGTGCTCCAGCAGGGTGTATTGGTGGTGCTAATCCTTCCGGCTGGTCAAACGAGCAACTGTTTATTGAATTCTTCGTACATTTTATAGCACATTCAAAGCCAACACCAGATGAAAAAGTCTAG
- Protein Sequence
- MPRSKEGVKRTPLDENALQEAINDVLYNKETIGRAAKDHGISKTTLFRHLQMHRKSGDATFKYSWQRVDDWLFWHQTLSLRKPESTSFSRSTSFNRCNVGQFFTNLEDCYSRFKFYPSRIYNLDETGNSTVYVPPKVLAAKGEKQIGSMTSGERGINVTMVAAINAIGNHVPPMLIFPRVHFKEHMLNGAPAGCIGGANPSGWSNEQLFIEFFVHFIAHSKPTPDEKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -