Basic Information

Insect: Cheilosia scutellata
Gene Symbol: -
Assembly: GCA_955612985.1
Location: OY015312.1:118452635-118464486[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 6.7 7.8e+02 1.6 0.2 2 16 49 63 49 65 0.83

2 11 2.5 2.9e+02 3.0 1.5 2 23 275 297 274 297 0.92

3 11 9.1e-06 0.0011 20.1 0.9 3 23 308 329 307 329 0.97

4 11 0.0054 0.63 11.4 3.2 2 23 336 358 335 358 0.95

5 11 0.15 18 6.8 3.3 1 20 367 386 367 389 0.91

6 11 0.0027 0.32 12.3 5.8 1 23 398 420 398 420 0.97

7 11 2.4e-07 2.8e-05 25.1 0.1 1 23 426 448 426 448 0.98

8 11 0.0001 0.012 16.8 3.8 1 23 454 476 454 476 0.98

9 11 1.6e-07 1.8e-05 25.6 0.8 1 23 482 504 482 504 0.98

10 11 0.00014 0.017 16.3 4.2 1 23 510 532 510 532 0.98

11 11 3.3e-05 0.0038 18.3 5.2 1 23 538 561 538 561 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	6.7	7.8e+02	1.6	0.2	2	16	49	63	49	65	0.83
2	11	2.5	2.9e+02	3.0	1.5	2	23	275	297	274	297	0.92
3	11	9.1e-06	0.0011	20.1	0.9	3	23	308	329	307	329	0.97
4	11	0.0054	0.63	11.4	3.2	2	23	336	358	335	358	0.95
5	11	0.15	18	6.8	3.3	1	20	367	386	367	389	0.91
6	11	0.0027	0.32	12.3	5.8	1	23	398	420	398	420	0.97
7	11	2.4e-07	2.8e-05	25.1	0.1	1	23	426	448	426	448	0.98
8	11	0.0001	0.012	16.8	3.8	1	23	454	476	454	476	0.98
9	11	1.6e-07	1.8e-05	25.6	0.8	1	23	482	504	482	504	0.98
10	11	0.00014	0.017	16.3	4.2	1	23	510	532	510	532	0.98
11	11	3.3e-05	0.0038	18.3	5.2	1	23	538	561	538	561	0.98

Sequence Information

Coding Sequence: ATGGTTTCGGTGTGCCGCTTGTGTGCGTCGTTAAAGAAAACCGAAAAGTTGACGTTTATTCGAGATAGCAACCATGAAATCTGTCAAAAACTGTACAAATGCTGCCAGCTCTCcatcgacttaaaagatgtacTTCCGAAAGGTGTGTGTCCGGAATGTGTTCGCAGTTTAAATACTTCTTTTGAATTCTACAAGAGGGTGCATGAATCACAGCAATCGCTGCGACAACTCCTCAACATCGGAAATGAACTACCTTCGGAAGAAGCAGAGGAAATGGATGTGGACGAAAACGAAATTTCAAAGGAAAAAACATCTTTAGCTGTGATGGCAGCTGTGGCTGCCTGCGGAATGGAGAAACTTCCCGATGAGACACCACCAACTGCGAATGAAGAAAATGAAGATGATGTTAATAGAGTTCTCGATGAAATACTTGGTGTTAAGGACGAACAACAGGTGTATTTGGAATTCGAATCAGGACAAGAAGATGATACACCCACTACTGAAAGAGTTTTAGAAGTGGATTCCGATGAGGTGAACACTCCAAACAGCATTCAAAGCATTATCATACCGGACACCAGCTATACTGGTATAGAATTAATCGAACAAGTCGGAGAAGAGGAAGAAGTGGAAATCGATTTCGATAACAACCACTATGAAATAATCgaacaagaagaagaagaagaggaagaaatagaAGATGTACCAGTTGAAGATCAGCAACAGTATGAAATACACGACAATGTAGTAGATGTGCTTACGAAGCCGTCAACCTCTTTGCCTGCTGCGAATATACCGACTGACACTTGGAGCGATTATCCATGGAAATGTGCTCGTTGCTTGGACACATTTATGTCTGCCGAACAGCTGGTCAAACATAATAGGCATAAGCACCTAGCACAGGTATCAGATACGGAATGGTTATGCGCAGATTGTCAAAAGTCGTTTTCGCGATATTATTCTCTAATTACGCACATTCGTCAGCGACATCGTTCACATTTGGCTCTTTATTGTGACGTCTGcaataaaaaatgcaattcattTAAAGAATTGGAGCAACATCGAACAACTTTACATGCATGTGAAGAAAATCTCATCATGTATCTATGTGCGACATGTGGAAAAGGCTTCCACACAACCAACTCCCTGCAGATGCATGGCAAATGTCACCTGCCCGACGATCAACGATTGAAGTTTGATTGCCACTTGTGCGGTAAAAAGTTCCGTACGACAACAAGCttaaaatttcattacaaaatgcACTCGGgAACTCGTGACTATGTTTGCGATCAATGTGGGAAGAATTTCGTACAGAAGGGAAATTTAGAAGAACATTTGATAACACACTTAAACTTTACGCCATACGAATGTTCTTTGTGCAACAAATTttttaaaaCTCCAGACCGCTTGGCCAGACACAAGCATCGTCATACTGATGAGAAACCTTTTAGCTGCACCGTATGCGATAAGACGTTCCGTACAAAGGATGCAATGGCAACGCATATGCGGATTCACACCGGAGAGATGCCATTTCAGTGTGAATTCTGCCAGAAGCCTTTCCGGTTTAGGAGTACACTACTAACTCATCACAACGTTCACACCGGTACTAGACCCTACTCATGCCTAGACTGCGACCACCACTTTACCAACTGGCCTAACTATAACAAGCACATGAAGCGTCGTCACGGAGTTGACGTTTCCAGTAAAAATCCACGCGGTAAAAAACCCAGCGTTCCAAGGAAGCCTCTGACGAAAAAACCAATAACGTCTTATACCATTGTCAAGGAGGAAGGCAATTTAACAATTCGTAGCGGGaatgaagaagaagaggaaCCGTCACAAGAACAAGAACAGGATCATGAGCTCGAACACGATGAGGAAGAAATGGTAGACAATATTgacataacaataacaaaactggAAGATGAATCGCAAGATAACAATTATGAGGACAACGCCGtttga
Protein Sequence: MVSVCRLCASLKKTEKLTFIRDSNHEICQKLYKCCQLSIDLKDVLPKGVCPECVRSLNTSFEFYKRVHESQQSLRQLLNIGNELPSEEAEEMDVDENEISKEKTSLAVMAAVAACGMEKLPDETPPTANEENEDDVNRVLDEILGVKDEQQVYLEFESGQEDDTPTTERVLEVDSDEVNTPNSIQSIIIPDTSYTGIELIEQVGEEEEVEIDFDNNHYEIIEQEEEEEEEIEDVPVEDQQQYEIHDNVVDVLTKPSTSLPAANIPTDTWSDYPWKCARCLDTFMSAEQLVKHNRHKHLAQVSDTEWLCADCQKSFSRYYSLITHIRQRHRSHLALYCDVCNKKCNSFKELEQHRTTLHACEENLIMYLCATCGKGFHTTNSLQMHGKCHLPDDQRLKFDCHLCGKKFRTTTSLKFHYKMHSGTRDYVCDQCGKNFVQKGNLEEHLITHLNFTPYECSLCNKFFKTPDRLARHKHRHTDEKPFSCTVCDKTFRTKDAMATHMRIHTGEMPFQCEFCQKPFRFRSTLLTHHNVHTGTRPYSCLDCDHHFTNWPNYNKHMKRRHGVDVSSKNPRGKKPSVPRKPLTKKPITSYTIVKEEGNLTIRSGNEEEEEPSQEQEQDHELEHDEEEMVDNIDITITKLEDESQDNNYEDNAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -