Cscu027648.1
Basic Information
- Insect
- Cheilosia scutellata
- Gene Symbol
- MIMI_R795
- Assembly
- GCA_955612985.1
- Location
- OY015314.1:75046241-75052302[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.2 6.2e+02 2.0 0.2 1 10 406 415 406 419 0.83 2 13 1.1 1.3e+02 4.1 0.8 1 23 577 602 577 602 0.85 3 13 0.00046 0.054 14.7 1.8 1 23 608 630 608 630 0.98 4 13 0.11 13 7.3 0.3 2 17 665 679 665 680 0.80 5 13 0.0002 0.023 15.9 4.9 1 23 694 716 694 716 0.98 6 13 0.00033 0.038 15.2 0.0 1 23 722 744 722 744 0.95 7 13 9e-07 0.00011 23.2 2.3 2 23 750 771 749 771 0.97 8 13 0.0025 0.3 12.4 0.6 2 23 779 801 778 801 0.91 9 13 0.00019 0.023 15.9 2.8 1 23 825 847 825 847 0.99 10 13 1.4e-06 0.00017 22.6 2.6 1 23 853 876 853 876 0.97 11 13 3.9e-07 4.6e-05 24.4 0.5 1 23 882 905 882 905 0.96 12 13 3.9e-05 0.0046 18.1 0.8 1 23 911 933 911 933 0.98 13 13 0.0004 0.047 14.9 6.1 1 23 939 961 939 961 0.98
Sequence Information
- Coding Sequence
- ATGCGagaaaaagAAACAGCAAGTGGTTTTCTTATTCGAGAAGGTGGCGTCCTTGCTTCCTCATCCGTTGATGGAACCATTCTCTTGTGGGACATTTCTACGggacaaaaaacaaatacacTTTATCAAGCAAATGGAGAGGCGGTTCGATCATGTTGCTTCAGTCCAAATGGATTTTTTATCGCATCTGCTGATGACAGTGGGACTGTCTGCATTTGGGGACAAGACAAAAGTTTGGTCAAAGTTCTCCATTATCACGAAGAAACGGTTTACGCTTTGGCCTTTTCTGCGGACTCGAGTATTCTTCTTACGGCTTGCAATACAGGAATGATTAGACTGACACTAATTAAAAATAATGGTGAAACTCTGAACAACGAATACGATTGCGGTATAGACCATGCTCATGACCTCGGTGTTGTGTATGCAGATTTTTGTAGACTCGTTCATTCAGATCCGTCAGATCCTGATACAACCATTCACACTGCAGCCACTTGCGGCAATGATCAGTGTATCAAGCTATGGAGGATCTATTCTCtgaaatcaaatgaaaatttgaaaaattctcgACTTGTTCCAACTGGACCCAGTGAAAGGGAATCCGGAAATTCAGTAGTATATAGCTCTAGTTTGCTGAATGCCGAGTGTGTTCTTACAATTTCCGGTCATGGATGTTCTGTTACATGTGTCAGATTCAACTCACGAGGGACGCTGTTGATCTCTTCCGGCATGGATAAAGCTGTTAAAGTATGGGACCTACAGGGAAACTGCCTACAAACTTTGCTCGAACATTCTCGTTACGTGAATTGCGTAGCAATCAATGGTGATTCAACTATACTTGCTTCTGGATCTAACGATCGGTCAGTGATTGTTTGGGATCTATCAGCTACACTAACGCTAGAGTCACATATTGCTGGATTTCGTTCTATTATATTTAATATGGCAGCGAGCGAGATAGATATTCCACTGGATCTTATTTGCCCTATTACTCATGAAATAATGACTCATCCGGTATTGGCAGAAGACGGTTTCACTTACGAAAAGTCCGCCATTTTGGAATGGTTTGATCGTGGAAAGAATACGTCCCCTATGACAAATGAGGAACTAACAAATCTTGAAGTCACTGACAACGAAgatcttaaattaaaaattgaggAGTTCCTTAAAACCTTGGACTTTGATTCTTTTGACGGATTTTTAGGCATGAGTGTAGCGGAACATACTTGCAGGACATGTGGGAAGATGTCTGAACAGGAAGATGGCTCGGATCTCTATCCAATGTACACCTCTACAGAATACCACAACGAATTGAGAATGGTCTTGGAGGAATTCGAAATATGGAATCTCAACATCGCACAAGGTGATGGCTTGCCACAGAAGATTTGCCTTACTTGTTTTGACAGTTTCTGTCAAATACATAACTTCCGCATGATATGCCAAGAGGCACAAACGAATTTTGGTGAATTATGCATTGGACTGGATATCATAATCAAACTTGAAGCACAgtatgatgatgttgatgttgactATCCAGAAGACTTCGAAGGTGAACAAACAATAACCGTTCAAGAGCACTACCAGTTCCCCACTGGTGAAGCACAAAATGTTTCAGATAAGCCGGACAGCTCGAGAACATGCGAAAAGCTTTTGGAAACACTAAACTCTGATGATGAATGTAAAACAAAACAGGACCAACAAAATGCGGATGCAAATATTTCCGAGCTCAAACAGTATCAATGCGAATACTGCATGGATGTTGTCGATTTCGATGATCCAGAGCTGCTAAACCAGCATTATAATACCCTACACGCATCAGACCTTCCCTACCAGTGTCCGCAGTGTGAAAAGTGCTTTGACACAAAAGCGAAACGCAATGGCCATGCTAGAGTCCATTTTCGAGTAACACTCGATTGTGAAACCTGTGGCAGGAAAATTCGGGGCGGTAAGCGAATGATGGACCGACACAATGAGTTGCATCATGTCTTAAAGATACGCGAATGTACTATATGTGGCAAGAAGTTTGACAAAATCACTCTGAAGAGGTTTCACTACCACCAGAGCTGGCACGATGAAACCAAGTTGCACAAGTGCAAATATTGTGAGAAAAAGTTTATTCAAGTGACACATTTAGTAGTGCACGAGAGGACACACACCGGAGAGAATCCTTTCCTCTGCAGTGAGTGTGGTATTGGATTTACAAATTCAGACATTCTTGAGGCTCATATAAAAATGCACGGAGTGAAGGATTTACAATGCCCTAGCTGCCCGAAAACATTCGCGCATCAACATAACTTGAAGATCCACATGCAAATTCACGACCCTGACAGGAAAGGTTCGCGCTGCGAGATTTGCGCAAAGCCCTTCCGTTCCGCTATGAATTTACGTTTGCATAACTATAAAAGACATGGTGCTCCAGCTACAACTGCTATTCTTAACATTTTGCAAAAGCGCGAGAAGTATGCGCTCATAAAACCCTTCAGATGTAATATGTGTTCCGAATCTTTTGTTCTGCACACACAGTTGGAGAAGCACGTGAAAACTCACAGCGAAATCAGGCCGTATACATGCGATCAATGCGGCAAATCCTTTAAGCGAGATTCTCATCTAAAGTTGCATGTGAATTCGCTTCACTTGAACAAGAAACCACACAAATGCTCTATCTGTGGATGGGCGTTTCCACAAAAAAGCAACTTGAGGGAGCATATTGCTTCGAAGCATGAAAATACGAAGGAGTTCAAATGCGATACATGTGGAAAGTCATTTGCTATTGCGAAGACGCTTAAGATTCATAAGCTCAGACACTTGGACAAGAAATCACATACCTGCACCGTATGTAACAAGAGTTTCAGACTACATAATACCCTTAAGACGCACATTAATTCCCACTGGAGGAAGAACGAAACAAAAGTAGTCACCGGTACTATAAAGAATGTTATCGTCTAG
- Protein Sequence
- MREKETASGFLIREGGVLASSSVDGTILLWDISTGQKTNTLYQANGEAVRSCCFSPNGFFIASADDSGTVCIWGQDKSLVKVLHYHEETVYALAFSADSSILLTACNTGMIRLTLIKNNGETLNNEYDCGIDHAHDLGVVYADFCRLVHSDPSDPDTTIHTAATCGNDQCIKLWRIYSLKSNENLKNSRLVPTGPSERESGNSVVYSSSLLNAECVLTISGHGCSVTCVRFNSRGTLLISSGMDKAVKVWDLQGNCLQTLLEHSRYVNCVAINGDSTILASGSNDRSVIVWDLSATLTLESHIAGFRSIIFNMAASEIDIPLDLICPITHEIMTHPVLAEDGFTYEKSAILEWFDRGKNTSPMTNEELTNLEVTDNEDLKLKIEEFLKTLDFDSFDGFLGMSVAEHTCRTCGKMSEQEDGSDLYPMYTSTEYHNELRMVLEEFEIWNLNIAQGDGLPQKICLTCFDSFCQIHNFRMICQEAQTNFGELCIGLDIIIKLEAQYDDVDVDYPEDFEGEQTITVQEHYQFPTGEAQNVSDKPDSSRTCEKLLETLNSDDECKTKQDQQNADANISELKQYQCEYCMDVVDFDDPELLNQHYNTLHASDLPYQCPQCEKCFDTKAKRNGHARVHFRVTLDCETCGRKIRGGKRMMDRHNELHHVLKIRECTICGKKFDKITLKRFHYHQSWHDETKLHKCKYCEKKFIQVTHLVVHERTHTGENPFLCSECGIGFTNSDILEAHIKMHGVKDLQCPSCPKTFAHQHNLKIHMQIHDPDRKGSRCEICAKPFRSAMNLRLHNYKRHGAPATTAILNILQKREKYALIKPFRCNMCSESFVLHTQLEKHVKTHSEIRPYTCDQCGKSFKRDSHLKLHVNSLHLNKKPHKCSICGWAFPQKSNLREHIASKHENTKEFKCDTCGKSFAIAKTLKIHKLRHLDKKSHTCTVCNKSFRLHNTLKTHINSHWRKNETKVVTGTIKNVIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -