Cscu026482.1
Basic Information
- Insect
- Cheilosia scutellata
- Gene Symbol
- -
- Assembly
- GCA_955612985.1
- Location
- OY015314.1:54117615-54122048[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.58 68 5.0 0.1 2 23 232 254 231 254 0.95 2 17 1.1 1.3e+02 4.1 0.1 6 23 263 280 263 280 0.96 3 17 1.2e-06 0.00014 22.9 1.1 1 23 286 308 286 308 0.98 4 17 0.029 3.4 9.1 5.4 1 23 314 336 314 336 0.97 5 17 0.0015 0.17 13.2 0.5 1 23 342 365 342 365 0.90 6 17 0.00047 0.055 14.7 0.1 2 23 372 393 371 393 0.93 7 17 0.0005 0.059 14.6 0.2 1 23 401 424 401 424 0.97 8 17 0.00021 0.025 15.8 1.0 1 23 431 454 431 454 0.93 9 17 0.0066 0.77 11.1 0.2 1 12 460 471 460 473 0.92 10 17 0.017 2 9.8 0.4 2 23 635 657 634 657 0.96 11 17 0.045 5.2 8.5 1.8 6 23 666 683 666 683 0.99 12 17 5.8e-06 0.00068 20.7 1.0 1 23 689 712 689 712 0.98 13 17 7.2e-06 0.00084 20.4 4.7 1 23 719 741 719 741 0.98 14 17 0.0004 0.047 14.9 0.2 3 23 748 769 746 769 0.96 15 17 0.00071 0.083 14.1 0.3 2 23 778 800 777 800 0.96 16 17 0.00048 0.057 14.7 1.0 1 23 807 830 807 830 0.94 17 17 0.072 8.4 7.8 2.0 1 17 836 852 836 853 0.91
Sequence Information
- Coding Sequence
- atGTTATGCATTTTGTGCATGAAGGCTGAGGatcaaataataaatatcttCGATGCTCACGGACTCAATCTTAATATCAGCAATATTGTCACAAAACATTTTTGGCTGCAGCCGAATGAAGAAGATCCCAATGCCAAAGTAATCTGCTCCATTTGTTGGAATGCATTGGAATCATTTCACAAATTCTATCAAGAGGTAGAACAGGTCCATCTTGGTCTATTCAAAGAAAGCTTTACTGATGACAATCTGTTCAAAGTCGAAACCTCTCCAACACCGGATATTTTCAATACATATCCTGCTGTGTTTACCGCAAGCAATAAGGTGGAAATAAATGAGGATACCAATGTGGATTTGACAGCATGCGATGTTGAAAAGTTTCACTACCCACTGATACAGATTAATGTTTGTGATGTAAAAGTACAAGATATAAAGTCTGATTCAGAGTCAGACATTCCTCTATCTAATTTGATAAATTCTAGGAAATCATCAAGCGTTGTAAAGAagaaacgaataaaaaaagacagcttgttgaaaaaaaagaaacagaaacaaaaaaaggaagtaCCTATCGATGATGTCAACACTGATAAAGAAACATATAAACACTGGCCAGCGTCCAGTTACGCCGAAGAAGTTGATCATAACATAAGCTGTAAACATCTTGATGCACTTATTGAATCCACTTTGAAGTTATCGTGCAACATTTGCCAGTCGCCATTGTCCGGGTATGCAGTCCTCAGGGATCACTATCGAACAGTTCACAATGAACTCGGTTACATAGCATGTTGTGATAAGAAATTTGATAAACGCGGCCCACTAGTCGATCACCTTCTATTTCACAAAAACCCCGAGTACTTCAGGTGTGAAATATGCGATCGCAAATTTGCCAATCGGAAAAACTTGAAGGAACACCTGAAAGGACACGACAAAAAGCTCATATTTCATTGTGATAGTTGTCCAAAGAGTTTCCATCGAAAGTTGCTGCTCGACCGGCACAAGGATACACATATTTTGGATCGCACCTTCAAGTGTGATGAATGTGGCAAGCTCTATACCTCAAAGTTTACACTTGGACAACATGTCTATGCAGCGCACAAGGGTGGTTATACCAAAGTGTGTGACCAATGTGGGAAGGTGTTTCAAGACGTGGACGCTTTTCGTCGACATTTGGTGGCTCATACAGATGAGCCCAAACCGTTTTTTAGTTGTGATAAATGTGGCGCTAAGCTTGCCAGCAGAGCCGGCCTCTTAAGACACTTGAGGTCTAAGCACACAGAAACGGATGTCACCCATATTTGCAATATTTGCGGAAAGGTATCGGCCAATAAAATCGCTCTAAGGCACCATATAACATATATGCATAAATACGAACGAAAGTTCAAGTGCCCTATGTGCGACAAGGCATTCAAAACGGCAATCATACTTAAGCCAAGTAAAGAAGATTCCAATAAGAGCACAATTTGCCGTTCATGTTGGCAGGCATTATACTCATTCCACGAATTCTACGAAAAAGTGGAGAAAGCCCATCATAagtttttaaatgcaaaatttccAACCGAAGATACTCTATCGACAAACAATCATTTTGATACATATTCCGACTTGTTTGCAGAAGATATTAAAGTGGAGGCGTCTGAGGAACCTAAAATTGATATAGCCCAAGTTGAAGTACAATTATCTGAGGAAAATCGCGAAATACAAAGCCAAATAAAATCTGGGTCCGACTCGGATGTTCCTCTAGATTATGATGATAATGATGCCGACGAAGAAGAAAATGATACTGACTACAAAGTGCCTGAAAACAAGGATACAGATAATAATGCCTCCGTCAAACGAGAGTATAATAAGCACCGAATTCCCTGCAAACAGTTTGATGAACTTATCAAACAGAATATGAAGCTGTCGTGTAATGTGTGTAACATTTCTTTGGAAAGttttttcacactcaaggaGCACTATAGGTCTGCTCATAATAAAATCGGCTACGTTACCTGTTGTGAGAAGAAATTCGACAGTCGCCATGCTCTGGTTCATCACATTCTTATGCATAAAGATCCAGAGACGTACAAGTGTATGAAATGTGGACGAGTCCTAGCCGACCGCAGGGGCTTAAAGCGGCACATGAAAACAACGCACGTAAATGAGGAACGTGTCCATCAGTGTCAGAAGTGTAAAAAGGGTTTTCGGCGGAAAGAGTTGCTTGAGAAGCACGTAAAAACACATGTGAGACCTGAGGTTATCTGCGAGCAGTGTGGGAAAGTAGTACGCGGCAAGCAGTATCTTAAACAGCATCAGTTGCGGGAGCATTCGGGAATACCAAAACAACGCCAACAATGTCCCAAGTGTGGCGTTTATCTTGCGGATAATTCAACTCTATCTACTCATATGAAGTATCAACATCCAGTTGTTAAAGTTATACACGAGTGTCATATTTGTGGAAAAATATCAGCCACGGGTTATGGCCTAAAGCGTCACATAGAATACATGCACACACGGGGACGGCCGCATAAGTGCACATTGTGCGAAAAGGCTTTCAAGACGCTGAAATGTCTTCGGGAAGCAATTATGCGAAAAGAAAATGCTTTCTATCAAATTAGTGAATCATCGGCTTATGATATTTGA
- Protein Sequence
- MLCILCMKAEDQIINIFDAHGLNLNISNIVTKHFWLQPNEEDPNAKVICSICWNALESFHKFYQEVEQVHLGLFKESFTDDNLFKVETSPTPDIFNTYPAVFTASNKVEINEDTNVDLTACDVEKFHYPLIQINVCDVKVQDIKSDSESDIPLSNLINSRKSSSVVKKKRIKKDSLLKKKKQKQKKEVPIDDVNTDKETYKHWPASSYAEEVDHNISCKHLDALIESTLKLSCNICQSPLSGYAVLRDHYRTVHNELGYIACCDKKFDKRGPLVDHLLFHKNPEYFRCEICDRKFANRKNLKEHLKGHDKKLIFHCDSCPKSFHRKLLLDRHKDTHILDRTFKCDECGKLYTSKFTLGQHVYAAHKGGYTKVCDQCGKVFQDVDAFRRHLVAHTDEPKPFFSCDKCGAKLASRAGLLRHLRSKHTETDVTHICNICGKVSANKIALRHHITYMHKYERKFKCPMCDKAFKTAIILKPSKEDSNKSTICRSCWQALYSFHEFYEKVEKAHHKFLNAKFPTEDTLSTNNHFDTYSDLFAEDIKVEASEEPKIDIAQVEVQLSEENREIQSQIKSGSDSDVPLDYDDNDADEEENDTDYKVPENKDTDNNASVKREYNKHRIPCKQFDELIKQNMKLSCNVCNISLESFFTLKEHYRSAHNKIGYVTCCEKKFDSRHALVHHILMHKDPETYKCMKCGRVLADRRGLKRHMKTTHVNEERVHQCQKCKKGFRRKELLEKHVKTHVRPEVICEQCGKVVRGKQYLKQHQLREHSGIPKQRQQCPKCGVYLADNSTLSTHMKYQHPVVKVIHECHICGKISATGYGLKRHIEYMHTRGRPHKCTLCEKAFKTLKCLREAIMRKENAFYQISESSAYDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -