Cscu027543.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cheilosia scutellata
Gene Symbol
zfh1
Assembly
GCA_955612985.1
Location
OY015314.1:73323891-73329770[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 5.7 6.7e+02 1.8 1.3 3 23 182 204 180 205 0.74
2 25 0.00099 0.12 13.7 2.7 3 23 213 233 211 233 0.97
3 25 4.6 5.4e+02 2.1 0.2 3 10 240 247 238 249 0.84
4 25 0.32 38 5.8 0.5 2 13 268 279 268 291 0.82
5 25 4e-05 0.0047 18.1 6.2 1 23 297 319 297 319 0.98
6 25 9.2e-06 0.0011 20.1 0.3 1 23 325 347 325 347 0.98
7 25 0.00022 0.026 15.7 4.6 2 23 353 374 352 374 0.97
8 25 0.067 7.8 7.9 3.0 2 23 384 406 383 406 0.89
9 25 5.7e-05 0.0067 17.6 2.4 1 23 431 453 431 453 0.99
10 25 5e-06 0.00059 20.9 2.5 1 23 459 482 459 482 0.98
11 25 1.7e-05 0.0019 19.3 0.6 1 23 488 511 488 511 0.93
12 25 4.5e-05 0.0053 17.9 0.1 1 23 517 539 517 539 0.98
13 25 0.00024 0.028 15.6 3.5 1 23 545 567 545 567 0.98
14 25 0.013 1.6 10.1 2.8 3 23 750 770 748 770 0.97
15 25 3.4 4e+02 2.5 0.2 2 10 776 784 775 787 0.86
16 25 0.13 16 7.0 1.1 2 14 805 817 805 824 0.83
17 25 7.3e-05 0.0085 17.2 1.3 2 23 835 856 834 856 0.97
18 25 0.00042 0.049 14.9 2.6 1 23 862 884 862 884 0.96
19 25 0.0011 0.12 13.6 0.2 2 23 890 911 889 911 0.96
20 25 0.0051 0.6 11.4 3.3 2 23 920 942 919 942 0.92
21 25 0.00024 0.028 15.6 1.4 1 23 967 989 967 989 0.99
22 25 2.9e-05 0.0034 18.5 6.4 1 23 995 1018 995 1018 0.95
23 25 0.00025 0.03 15.5 4.5 1 23 1024 1047 1024 1047 0.93
24 25 8.8e-05 0.01 17.0 1.0 1 23 1053 1075 1053 1075 0.98
25 25 0.00043 0.051 14.8 1.0 1 23 1081 1103 1081 1103 0.98

Sequence Information

Coding Sequence
ATGAGTGTCGTGGATAATACTTGCAGGACGTGTGGAAAGCCATCTGATCAGGACGATGGCTCTGATCTGCATCCAATGTACACTTCAATTGAGTACCATAACGAGTTGAAAATGGTTCAAGAGAAATTTGAAATATGGGATCTTAATATTGCTCAAAGCGATGGCCTACCTCAAAAAATTTGCCTTACTTGTTTCGATAGTTTCTGTCAGATTCACAACTTTCGCTTGATATGCCAAGAGGCGCAGATGAACTTCGGCGAACTATGCACTGGTCTGGACATCATAATCAAGGTCGAATCCGAGAGTGGCGATGTCGATGTAGACTATCCGGAAGATTTCGAAGGCGAGCAGACCATCACTGTTCAGGAGCACTATCAGTTTCCCGGTGATGAGCGAATAAATTTCCTAAATCTAGATGAAGAAAAAACATGTAAAAAACTTATGGAGAATGTCGATTCGGACGAAGAGTGTCGAATTGAGAGACAACGCAAAGAAGAGATTGAAGAACAGAACGCTGTGATTCCCGAGTTCAAACAATTTCAATGCAAATTCTGCATGGATGTTGTAGGTTTTGATGATCCAGAGCTCCTTAACCAGCACTACAATCTACACCACTCTACGGATCTACCCTATGGTTGTCCTAAATGTGAAAAGTGCTTTGACAACAAAAGTAAACGAAATAGCCATGCTAGAGTTCATTACCGAATCGTACTGGACTGCCCGGTTTGTGGTAAGAAAGTACGTGGAGGAAAGAGAATGATGGCCCAGCACCATGAGTTCTATCACACTGAGAAAGATCGCGAATGCAAAACTTGCGgcaaaaaattcataaaagcaACGTTGAAGAGATTTAGGTACCACATGAGTTGGCATGATgaaaccaaacttcacaaatgCAAGTTCTGCGATAAGAAGTTCATCCAGCTCACACATTTGGTGGTACATCAAAGGACTCACACGGGCGAGAGTCCCTTTGTCTGCAGCGAGTGTGGAATGGTATTCAAAAATTCCGGCCTTCTATACTCACATTTGAAACTGCACGGGAAGGGCGAATTAACCTGCAATGTGTGTAAGAAAAAATTCTTTCATCCTCACGGCTTGAGGCTTCACATGCAAATGCACGATCAAAAAATACCAAAAGAAGGGCTTCGTTGCAATATTTGCGATAAAGCGTTCGGCACTTGTTTGAATCTGGACTTACACAACCACAGTAAACATGGAGCACCAGCGACGGCTGCAGTTACAAGCGTTTTAAATAAGCGAAAGATAAAACCAGTACTCATCAAACCATATAAATGTGGCAAGTGCCCGCAATCGTTTGTGCTGCATACACAGCTGATAAAGCATCTAAAAACTCATGACGAGTACAGGCCGTATACGTGCGAACGTTGTCAAAAATCGTTCAAGCGGGAAGCTCATTTGAAGTTACACATCAATTCGATACATTTGAACAAGAAGCCGCACAAGTGTACAATATGCGGATGGGCATTTACACTGAGAAACAACCTAAAACAACATATTGCCGCTAAACATGAGAAAAGGAGGGACTTTAAATGTGAGGTTTGTGGAAAGGCGTTTGCTATTGCCAAGGTGCTTAAGACTCATATGATAAAGCACACGGATGAGAAGCCGTTTACGTGCACTGTCTGCAACAAGAGCTTCCGTATGCTAACTTGTCTTAAAAGTCATGTCAACATTCATCTAAAGAAGAATGAAGCCAATGTCGCTGGAGGAGATATCACAGATATTGTAATTGCCCAAAGTGACGGCCTACCTCAGAAAATTTGCCTCACTTGTTTCGATAGTTTCTGTCAGATTCATAACTTTCGCTTGATATGCCAAGAGGCGCAGATGAATTTCGGCGAACTATGCACTGGCTTGGACATCATAATAAAGCTTGAACCCGAGAATGGCGATGTCGATGATGTTGACTACCCAGAAGACTTTGAGGGCGAGCAGACGATCACTGTTCAAGAGCACTATAGCTTTCCCGGCGATTGTCAGTCAAAATTATCAGATCCTCTTCAGGAAGAGAAATCTTGTGAAAAACTTTTGGAGACTGTTGATTCGGAGGAAGAGTACCGAATAGAGCAAGAACGCAAAGATGACCTTGAGGAGCAAAATGCTGTTCTTCCcgagttcaaaaattatcaATGCCAGTTCTGTATGAATTTTGTGGGCTTCGATAATCTAGAGCTCCTTAATAATCATTATAATCTTAAGCACTCTACGGATCTCCCTTATGGGTGTCCTAAATGTGAAAAGTGCTTTGACACCAAAAGAAAACAGTACAGCCATGCCAGAGTTCATTACCGGAAAGTAGTTGAGTGCACAATCTGCGGTAAAAAGGTTCGCGGTGGTAAGCGGATGATGGCTGCACACACTGAGTTGCATCATGTCGAGAAGGATCGCGAATGCACCACATGCGGCAAAAAGTTTACGAACATCTCCCTTAAGAAATTCCATTACCATTTGGGTTGGCATGATGATGCCAAACTCCAGAAGTGTAAATACTGCCCTAAAAAGTTCATCCAAGTCAACCATTTGGTAGCCCACGAAAGGATACACACAGGGGAGCATCCATATCTTTGCAGTGAGTGTGGAATGGGATTTAAACACTCCAATCTTATGTACAATCACATGAAAAAGCACCGAAAGGGCAATATTTCCTGTACTGTATGCGACGAAACATTTTTCAACCTCAACGGCTACAAGCTTCACATGATTATGCATAACCGTCATGGAGGAAATGTAACTCGCTGCGATCTGTGCGATAAGACATACAGCAATGTGACGAATTTGCGCTTACACAATCACAAAAAACATGGTGAACCAGCTACGCCGACAGTGGAAAAAATCTTGCAAaaatcttcaataaaaaaagtatttatcaAACCATACAAATGCGCAAAATGCCCGGAATCGTTTGTGTTACACCAGCAGCTTTTAAAGCATTTAAAAATACATGACGAAATTAGACCATACAAGTGTGATCGATGTCACAAATCATTTAAACGCAAGGTTCATTTGAACATACACATCAATTTTACACACTTGAGGAAGAAGCCACACAAATGTACAGTCTGCGAAAAGACATTTACACAGGCAAACCATCTTCGAGAACACTTTGCCTCAAAGCATGGGGACAAGAGAGATTTCAAATGCACTATATGTGGTTCCGCTTTTGCCGTTGCCAAGTGTCTTAGGAATCATATGATCAAGCACAGAGATACGAAACCTTTTACGTGTACAATATGCAATCGGAGTTTTATCGCATTAACCTTTCTGAAAAATCATGTCAACTCCCATCTGAAGAAGAACGAAGCTGATGTTGCAGGAGGAGATATTACAGATATCGTTGTAACCACAAACTGA
Protein Sequence
MSVVDNTCRTCGKPSDQDDGSDLHPMYTSIEYHNELKMVQEKFEIWDLNIAQSDGLPQKICLTCFDSFCQIHNFRLICQEAQMNFGELCTGLDIIIKVESESGDVDVDYPEDFEGEQTITVQEHYQFPGDERINFLNLDEEKTCKKLMENVDSDEECRIERQRKEEIEEQNAVIPEFKQFQCKFCMDVVGFDDPELLNQHYNLHHSTDLPYGCPKCEKCFDNKSKRNSHARVHYRIVLDCPVCGKKVRGGKRMMAQHHEFYHTEKDRECKTCGKKFIKATLKRFRYHMSWHDETKLHKCKFCDKKFIQLTHLVVHQRTHTGESPFVCSECGMVFKNSGLLYSHLKLHGKGELTCNVCKKKFFHPHGLRLHMQMHDQKIPKEGLRCNICDKAFGTCLNLDLHNHSKHGAPATAAVTSVLNKRKIKPVLIKPYKCGKCPQSFVLHTQLIKHLKTHDEYRPYTCERCQKSFKREAHLKLHINSIHLNKKPHKCTICGWAFTLRNNLKQHIAAKHEKRRDFKCEVCGKAFAIAKVLKTHMIKHTDEKPFTCTVCNKSFRMLTCLKSHVNIHLKKNEANVAGGDITDIVIAQSDGLPQKICLTCFDSFCQIHNFRLICQEAQMNFGELCTGLDIIIKLEPENGDVDDVDYPEDFEGEQTITVQEHYSFPGDCQSKLSDPLQEEKSCEKLLETVDSEEEYRIEQERKDDLEEQNAVLPEFKNYQCQFCMNFVGFDNLELLNNHYNLKHSTDLPYGCPKCEKCFDTKRKQYSHARVHYRKVVECTICGKKVRGGKRMMAAHTELHHVEKDRECTTCGKKFTNISLKKFHYHLGWHDDAKLQKCKYCPKKFIQVNHLVAHERIHTGEHPYLCSECGMGFKHSNLMYNHMKKHRKGNISCTVCDETFFNLNGYKLHMIMHNRHGGNVTRCDLCDKTYSNVTNLRLHNHKKHGEPATPTVEKILQKSSIKKVFIKPYKCAKCPESFVLHQQLLKHLKIHDEIRPYKCDRCHKSFKRKVHLNIHINFTHLRKKPHKCTVCEKTFTQANHLREHFASKHGDKRDFKCTICGSAFAVAKCLRNHMIKHRDTKPFTCTICNRSFIALTFLKNHVNSHLKKNEADVAGGDITDIVVTTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-