Cscu000931.1
Basic Information
- Insect
- Cheilosia scutellata
- Gene Symbol
- At3g55350
- Assembly
- GCA_955612985.1
- Location
- OY015311.1:18212299-18216972[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-07 0.00017 22.0 0.2 4 37 485 517 482 523 0.91
Sequence Information
- Coding Sequence
- ATGTGGCGTCACATTGCGTGCATTCTAAACAAACTTGGAGCTGAAAAATCGGTAGACCAATGGAAAAAAACATGGGCTGATCTCAAATCAGCAGtaaagaaaaaagccatagAATTAAAGGCCATAAATACTACCTATGGAACAGATTTTCCCATCGAAATGCAATTAAGTGAAGAGGATTATCAAGTACTTCGCATGTGTGACAAACACATATTGGAAGATATATCAGCAATTGCAGATGCCGCTccatttttgCGAAAAATAAATTCAGTGCAACGCTCGAGATTGCTAGAACTGATAGAAGataatatattaattttatgcACCGCAAATACAGAGGAGAAAATGGAGAAATGGTCAATGATTTCCGCAACACTTAATGGCTTGGGACATAAAAAGACCAGTCAACAGTGGCGCGAAATCTGGAGTGATATTAAAAATGGGGTAAAGAAAAAGGTGGCTGCGTTAAAAGCAGCTGGGAGCAGTAAGCAGCATGATGACGACTTGACAGAGGATGATCTTCAAGTGATACGAATTTTAGAGAACGAATCCGTCCAAAATCCAGAAGAAATGGAGGATTTGACTGAGACGACTCTGAATGagGAAAATATAACAAACGATTCATCAATCACATCTGTTAAATCGCTACCGGAAACCAGCAGTCATAAggctaaaatgaaaaattttcaaTGGGCGAGCCATAGCAACAGCATCGTTGAGTTTCAAAAGTCTATGATAAACGATATACAGATGCGCGATATTACTCTGGTGTTTAAAGGGAAATCTGTCAAAGCTCATCGTTTTATATTGTCAGCTTGTAGTACTCTGTTTTGCGCTTTACTAAGAGACGTACCTATTGGGCAAGACGCAACTATTATAGTTCCCGATCTCGACGGAAATCTGTTGGAAAGTTTATTGAGTTTTATCTATATGGGCGAAACGAATATCTGCGCAACAAAATTGACAGAGTTTCTAGAGGCTATCTCAAATCTTGGCATAAAGAGCCCCATTAGCTTTGAATGTGCCAACATAGCTACTCGGGGACCAAAAGAACCAACTAATAATATGGAGACGATCGAAGTGGAAGCCGAAGTGAAGCAGGAACTTCCTGATAAGAATTATGAGAGTGGGAAACAGACACACCCAAGCGAAAAGCAGAAAGATCTCACCTACAAAAATACTACTGCACTCACTGAATTCCATATGGAACGTTGTAATTCCTCGATATCATCACAAGACGATGTAGATGTTCTGGATGAACATCTCGATATAGACAGCCCTATGACAGAAGTGATTGATGAAGACCCAATCGGTGAGAATAAACAGACAGCAAAAGCGCCTTCCATTAAAAAGGAATCATCTGATAGTGATGAGGATGATATATCAGATAAATCAAGCCAACCTCAAACATTCCGAGATAAAGTAGATCGCCTAAGGACCGAACAAAGGAAATCACTAAAATCTGCTCTGCATGCTCATCTTCGGGGTATGGCCTTACAAAAAGCGGCCATCAAGTACAACGTATCGCGCACAGCTCTCGTTCGTCGCGTCACAATGTATAATCTGGAAAGAGCTCAAGCGAATCCTCAAACGAGAACCAAAAAGAGCACAACAATGTTTTGGAGCAGCGACGAAGATGACGAGGAAGCAACTAAAACTGATCTTCTTCGTATTCGAAAACACATAAGAACGAGGTCGAATCCATTGGATTTACCAGATATAAAGTTTAAACGGtttttcaaaatgtcaaaagaaGCTTTCGTGTATATTCTGGACGAGGTAAGAGATAAACTTCCCGAAACTACTCGTTCATCGTCTGTTCCTGCAATTTTGAAACTTGCTGCAACTTTGAGATTTTTGGTTGAAGGCAGCTATCAAAAGGGTTTAAGCAATGACTACAAATTAGGACTGGCACAGCCTACACTAAGTAAAATCCTAACTGATATGCTAATCATCATAGAAAATCACATATGCCCACAATGGATTAAATTCGAATATAGCGAGGAGGAAAAGCAGCAAGCTAAACTCTATTTTTATCAGCAAGCTGGAATCCCAGGTGTTATTGGGTGTGTTGATGCCACACACATCAAAATACTATCGCCAACGCAAGATCAGCAGAAGTACTGTAACAGGAAGGGCGCTCATACTTTGCACACTATGATTgttTGTGATCACCGAATGATTATCAGATTTGTTGATGCCAGACATCCTGGATCTGTGCATGAATCAATTGTTTGGAACTCAAGTGATCTCCGTGGTGTTCTACAGAAGAGCTACACTAATGGTGAAAAAAATACTTGGCTGTTGGGTGATGCTGGGTTTCCTCTTGAACCGTTTCTCATTACTCCGTTTACATCAGTAGAGGAGGGTAGCAAAGAGAGTAATTTTAACAAAAAGATTTCTAAAACTAAAGAAATAATCGAAAAAACTATAGGAGTGCTCAAAAATCGCTTTCAGTGTCTTCTTGGAGAAAGACCCTTACACTATAGTCCGCAAAAATCAACGCAAATCATCAATGTTTGCACTGCCATACATAATATTTGTCTGCATTTTAAATCAGACCTTCCAATACAGCGGAATGTGGCTGACGACGAAAGTGAAGACGAGTCTGCTATTGTGCACCGAAGTGATAAAAAAGCAGAGAAAGTACGTAATCAAGTATTGAAcgcaattttaacaatttaa
- Protein Sequence
- MWRHIACILNKLGAEKSVDQWKKTWADLKSAVKKKAIELKAINTTYGTDFPIEMQLSEEDYQVLRMCDKHILEDISAIADAAPFLRKINSVQRSRLLELIEDNILILCTANTEEKMEKWSMISATLNGLGHKKTSQQWREIWSDIKNGVKKKVAALKAAGSSKQHDDDLTEDDLQVIRILENESVQNPEEMEDLTETTLNEENITNDSSITSVKSLPETSSHKAKMKNFQWASHSNSIVEFQKSMINDIQMRDITLVFKGKSVKAHRFILSACSTLFCALLRDVPIGQDATIIVPDLDGNLLESLLSFIYMGETNICATKLTEFLEAISNLGIKSPISFECANIATRGPKEPTNNMETIEVEAEVKQELPDKNYESGKQTHPSEKQKDLTYKNTTALTEFHMERCNSSISSQDDVDVLDEHLDIDSPMTEVIDEDPIGENKQTAKAPSIKKESSDSDEDDISDKSSQPQTFRDKVDRLRTEQRKSLKSALHAHLRGMALQKAAIKYNVSRTALVRRVTMYNLERAQANPQTRTKKSTTMFWSSDEDDEEATKTDLLRIRKHIRTRSNPLDLPDIKFKRFFKMSKEAFVYILDEVRDKLPETTRSSSVPAILKLAATLRFLVEGSYQKGLSNDYKLGLAQPTLSKILTDMLIIIENHICPQWIKFEYSEEEKQQAKLYFYQQAGIPGVIGCVDATHIKILSPTQDQQKYCNRKGAHTLHTMIVCDHRMIIRFVDARHPGSVHESIVWNSSDLRGVLQKSYTNGEKNTWLLGDAGFPLEPFLITPFTSVEEGSKESNFNKKISKTKEIIEKTIGVLKNRFQCLLGERPLHYSPQKSTQIINVCTAIHNICLHFKSDLPIQRNVADDESEDESAIVHRSDKKAEKVRNQVLNAILTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00313639;
- 90% Identity
- iTF_00312804;
- 80% Identity
- iTF_00312804;