Cscu025116.1
Basic Information
- Insect
- Cheilosia scutellata
- Gene Symbol
- TIGD6
- Assembly
- GCA_955612985.1
- Location
- OY015314.1:29186482-29188330[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-07 0.00016 22.0 0.0 3 40 16 53 14 58 0.90 2 2 8.4 6e+03 -2.2 0.0 25 31 92 98 87 102 0.79
Sequence Information
- Coding Sequence
- ATGCCAAGAAGTAAGTCTGGAATTAAAAGACCGAATGTGGACATTGATGCTTTACGGCGTGCTGTGGAAGAAGTAGTGGATAATGGAAAATCCATGTATACCGCAGCAAAGATGTTCAACATCTCCAAAACCACGTTAATGCGTCATATCACCAAGCACAAGGGATCGAATAACTCTTCTTTTGTTTACGAGAATCGAATCAACCACCGCCAGATATTTTCGCCTGAAGAAGAAGACCTCCTAGCAGAGTATGTGATAAAGGCTTCCAAACTCCACTACGGACTACCCAGGTCGGAATTAAAGAAATTGGCTTTCCACTTTGCGGAAAAAAATAACAAGCAAATTCCCAAAAACTGGTTCGAACAGGGCGCAGCCGGCAGGAACTGGCTTAAATTGTTTCTTAAGCGCCACCAAACGATTGCTCTGAGAAAACCCGAGGCCACCAGCCTTTCTAGAGCTACTAGCTTTAACGAGGCCAACGTGAaaactttctttcaaaattaCAAAGATTGTTTATCCCGATATCACTTTTCACCTGAGCTAATATTCAATACTGATGAAACAgGTAATTCTACAGTTCATGTTCCGCCAAAAATTCTGGCTGAAAAAGGTGCTAAACAAATAGGAAGTGTAACATCAGGAGAACGAGGGCTAAATGTTACCATGATAGCTGCAGTGAATGCGATCGGAAACCATGTGCCTCCAATGCTTATCTTTCCACGCGTAAATTTTAAAGAGCATATGCTTAATGGAGCTCCTGCAGGAACGATTGGAGGTGCTAATCCAAGTGGATGGTCTACTGAGCAGTTGTTTCACAAATACttaaaacatttcatttcattcgtCAAACCAACTGAAGAAAAGAAAGTGCTTTTAATAATGGACAACCACGACACTCACATTGCTATTTCTGTAATAGAggaggcaaaacaaaataatgttaTTTTGCTTACACTACCGCCTCACACCTCCCACAAATTGCAGCCACTCGATAGAGCAGTATTCGGAGcttataaaacattttataataaagCCGCAAATGATTGGATGTTGTCTAATCCTGGAAAGCCAGTTACAATCTATGATGTGGCGCAAATTGTTGGAAAGGCTTTCCCGAAAGCTTTCACCAGCCAAAATATCATAAAAGGCTTTCAAGTAAGCGGAATTTGGCCGGtggatgaaaatattttcagtgAAGACGAGTTTTTGTCATCATACGTAACTGATAGGCCTCTCGTTATTGAACCTGTAACAGAGCCAGGTATTTTACCACCAACACCAACTGTAACTGCTCCGCCGATGACATCGGCTTCTTATTTATACGAAATCGGACCTTCAACATCGAGATCCGCAGCTGCTTTTTCAGATGAGGTCCCAAAAGAGATTATTTCACCAATACAAATAAGACCATTCCCCAAAGCTCCAGCCAGAAAATTGGCCAAAAAAGGTGGACGCAGATTGGGGAAAAGTAGGATCCTCACGGATACGGATACCCCCGAAAAACAAGAAATTCTAGCTAATAAAGCGccaaaaaagaaaaccaaaaaattgGCTAAAACTGTAAAAAAGAAATTGCTTAATCAATCTTCATCTTCGGAAAACGAAAACGAAGAGCCGCGCCGGACGGTCGATATCAGACGTTACGTAAAACCGAGAGCTGCAAAGGAAAAAGCACAGGACCTTCATCTCGCCAATGATGCTAATAGTGATCAAGACTTCGAAGCCGAAAGTGATTGGTCGATTTCGGAGGTGCTCACAgctgccagaaaaaaaaaattaattttctaa
- Protein Sequence
- MPRSKSGIKRPNVDIDALRRAVEEVVDNGKSMYTAAKMFNISKTTLMRHITKHKGSNNSSFVYENRINHRQIFSPEEEDLLAEYVIKASKLHYGLPRSELKKLAFHFAEKNNKQIPKNWFEQGAAGRNWLKLFLKRHQTIALRKPEATSLSRATSFNEANVKTFFQNYKDCLSRYHFSPELIFNTDETGNSTVHVPPKILAEKGAKQIGSVTSGERGLNVTMIAAVNAIGNHVPPMLIFPRVNFKEHMLNGAPAGTIGGANPSGWSTEQLFHKYLKHFISFVKPTEEKKVLLIMDNHDTHIAISVIEEAKQNNVILLTLPPHTSHKLQPLDRAVFGAYKTFYNKAANDWMLSNPGKPVTIYDVAQIVGKAFPKAFTSQNIIKGFQVSGIWPVDENIFSEDEFLSSYVTDRPLVIEPVTEPGILPPTPTVTAPPMTSASYLYEIGPSTSRSAAAFSDEVPKEIISPIQIRPFPKAPARKLAKKGGRRLGKSRILTDTDTPEKQEILANKAPKKKTKKLAKTVKKKLLNQSSSSENENEEPRRTVDIRRYVKPRAAKEKAQDLHLANDANSDQDFEAESDWSISEVLTAARKKKLIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01253821;
- 90% Identity
- iTF_01253821;
- 80% Identity
- -