Cscu012624.1
Basic Information
- Insect
- Cheilosia scutellata
- Gene Symbol
- -
- Assembly
- GCA_955612985.1
- Location
- OY015312.1:74108280-74108726[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-08 1.1e-05 25.8 0.0 3 39 16 52 14 57 0.90 2 2 1.4 9.9e+02 0.3 0.0 25 31 92 98 86 104 0.79
Sequence Information
- Coding Sequence
- ATGTCAAGAAGTAAGTCTGGAATAAAAAGACCGAATGTGGACATTGATGCTTTACGGCGTGCTGTGGAAGAAGTAGTGAATAATGGAAAATCCATGTATACCGCAGCAAAGATGTTCAACATCTCCAAAACCACGTTAATGCGTCATATCACCAAGCACAAGGGATCGAATAAATCTTCTTTTGTTTACGAGAATCGAATCAACCACCGCCAGATATTTTCGCCTGAAGAAGAAGATCTCCTAGCAGAGTATGTGATAAAGGCTTCCAAACTCCACTACGGACTACCCAGGTCGGAATTAAAGAAATTGGCTTACCACTTTGCGGAAAGAAATAATAAGCAAATTCCCAAAAACTGGTTCGAACAGGGCGCAGCCGGCAGAAACTGGCTTAAATTATTTCTTAAGCGCCACCAAACGATTGCTCTGAGAAAACCGAGGCCAACGTGA
- Protein Sequence
- MSRSKSGIKRPNVDIDALRRAVEEVVNNGKSMYTAAKMFNISKTTLMRHITKHKGSNKSSFVYENRINHRQIFSPEEEDLLAEYVIKASKLHYGLPRSELKKLAYHFAERNNKQIPKNWFEQGAAGRNWLKLFLKRHQTIALRKPRPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315111;
- 90% Identity
- iTF_00315111;
- 80% Identity
- -