Basic Information

Insect: Cheilosia pagana
Gene Symbol: ush
Assembly: GCA_936435595.1
Location: CAKZFE010000015.1:2597495-2602284[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.012 1.1 10.1 0.0 1 20 184 203 184 205 0.90

2 9 0.00024 0.022 15.5 0.8 1 23 252 274 252 274 0.98

3 9 0.026 2.3 9.1 1.0 2 21 299 318 299 319 0.92

4 9 0.042 3.8 8.4 2.9 2 21 677 696 676 697 0.93

5 9 0.0075 0.67 10.8 0.0 3 21 734 752 732 753 0.92

6 9 1.4 1.3e+02 3.6 0.1 1 23 799 821 799 821 0.71

7 9 0.012 1.1 10.1 1.3 1 23 827 849 827 849 0.99

8 9 0.00016 0.014 16.0 0.6 1 23 921 944 921 944 0.96

9 9 0.36 33 5.5 0.7 2 20 1071 1089 1070 1091 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.012	1.1	10.1	0.0	1	20	184	203	184	205	0.90
2	9	0.00024	0.022	15.5	0.8	1	23	252	274	252	274	0.98
3	9	0.026	2.3	9.1	1.0	2	21	299	318	299	319	0.92
4	9	0.042	3.8	8.4	2.9	2	21	677	696	676	697	0.93
5	9	0.0075	0.67	10.8	0.0	3	21	734	752	732	753	0.92
6	9	1.4	1.3e+02	3.6	0.1	1	23	799	821	799	821	0.71
7	9	0.012	1.1	10.1	1.3	1	23	827	849	827	849	0.99
8	9	0.00016	0.014	16.0	0.6	1	23	921	944	921	944	0.96
9	9	0.36	33	5.5	0.7	2	20	1071	1089	1070	1091	0.91

Sequence Information

Coding Sequence: ATGCAAAAGGATGCTGCAAGCATGCGAGCATTATTCATGATATCCTTGAAAACAAAGGATCTAAGCCCGAGTGAATTGAATGAACAAGCCGATGCGGTGTCGTCGGCGGACATAGATCAGTCGGCTGAACCGCGAACTCCGTTCACAACAGAATCCCTGATGGACGAGAACCGCCCGTCGTCGAGTACGCCCCGAACTTTATCGCCACCCTCGGATCCGGAAGTCGATGACCAGCATCGTTCACCTTCGGTCCGATCGGATATACAGTCGGCGACGAACTCACCCTCCGAGCATGAAGATGCATCAATAGTTCCTGCTGCTGCCGTTATTGCTGCCATTCCTAAGCTGCGCCTCAATGCACTTCTAGCTTCTGATCCCGCCCTAAATCCAGATGCGAGGAATTTGAAAATTCTCCACGAGGAGTCCACCAAGAATCATCACCACGAGGAAGGCGGTGTGACCCCCACTCCAGTCGTCGTCGATCAAAAGTCGGCGGCGAAAAACCAAACGTCAGCTGTTGTCGTCGATAATGCGCAGCGTGTCAAAGTGTTTATGTGTCTTCCCTGTGGCATTGGGTTTTCGTCGAGGTCGACTTTGGAGGCGCATCAGGCCTACTATTGTTCTCACAGAAAAGAAGTTGAAGAGGATCCAGCTGGaggaggcggcggcggcggaggaGGCACGTCTGGTGATAAGAATTCCACTGCTACATCCGGTGAGCCATCAGCGAAATCCATTAAGACTGGCAAGCAATACGCTTGCACACAGTGCTCCTACAGTGCCGACAAAAAGGTCTCGTTAAATCGTCACATGCGCATGCACCAAAGTTCACCGGCGCCAAGTTCGAACGCCTCGAATGGTGGCGATGATAGTTCTAGTCAACAAATCGATCGTTACTGCTCTGAATGTGATATTAGATTCTCGAATGTTAAAACGTATCGGGCACATAAGCAACACTATTGTAGTTCCAGACGCAATGATGGCCAAACGACACCAAAACTACCAGAGCCAAGCTTGAAAACTAGTGGCGGTTCCGTGAGTCCACCACAGGCGCGAACGAAAACGCCCACACCAGCTGCAGTCGTGGCAGctgcagcggcagcagcagccgccGTAACTCCACAGCCATTCATAGCTCTACCGACGAATCCCATTCTTATTATTCCATATTATCTAATACGAGCGGCCAGCATGATACCGGGACCATTAACATCGGTATCGTCTGGCATTGCGAATCCCGAAAGCACATGTTTCTCACTAGAAAACGGATCTCTTAAGCCAATGGCGACCGCCTTAAGCACCAGCAGCATTACGAACAACCAAATCCCCCATGTGGAGCCTACACCACGAACGCATCCTCCACCGGCACGTACTCCATCGAATAATGACACGGCAACACCACTTCTAACGGAGAAAAATGCACGCGCAGCGTCTGCAAATAGCTGCAGTGATTCTGTGAAGCAAAGCAAAAAGGACGGCCCTAGGGACTTTGCACCTCTAGACCTATCACTGCGTCGTTCACCGATTCAGAGGGCGCAACGCGTTCGCTCATCTTCCAGTTTCATGCAACCTGCTGATGAACGAATCGATATCGAAACGATGATGGAAGGCAAGGAGAATCTTTCCATCGACAGCGGTAGCATGACACCCGAGCAAATCGTTTGTGCTCCCTCTCTGCCGAATAGTCCTTCGATGAGTCCATCGCCGAAGCGTCGCACCCTCAGTCCACGAAGTAGCAGTGCGGCATCCATGTCACCTGTACCGCCATCTGTCATGGATCACCTGCCGCTGCGATCGATTTTACCCGCTGACATTGCCATGAAACTGACTGAGTCGAATATAATTCCACCACTGATCGCCAAACAGAATCTAGAGCTGGCCTTTAAGTTGTCTTCGGCGAACAGTAAACAAGGGGATGCGTCTAAGGCGGCAATGAGCAATCCACTATTGGGTTTGCCGGGCACGCCAATGAATGTGGGAGCTGCAAGCAGCGGACAGCCACAGATTTTCGTCAAGCAAGGCGTGTCCAAGTGCAAGGAATGCAACATAGTCTTCTGCAAATACGAGAACTACTTGGCGCACAAACAGCACTATTGCTCGGCTCGAAATCAAGAAGACACCGAAAGCAAGATCAGTACTCCTCCATCGGCGTCGAATTCCGGTGTGGATACCAATCCTATAGCCTATCAGCAGCTGATTTGTGCAGCCTGTGGCATCAAGTACACTTCGCTGGACAACTTGCGAGCTCATCAGAAGTTCTACTGCCCCAAGGGAGGTGGTGACGCCGCCGCTGCACCTCCAGTCACTAAGGAGAAGTGTGCAAAATGTAAAACGGTTCATGAAATCGGACAGCCCTGCCCGCCCATTGCTGCAACCGCTGCGCAACAAAGTTCCTACAAGTGTCCCGTTTGTGATGTCATCAGTCTGACGGCTGCCGAGAGTCGCAAGCATTTGGAAACGCATAGCAGCGTCAAGGCATTTCGCTGTTCCATTTGTCGGTACAAAGGAAACACGTTACGTGGCATGAGGACACACATTAGGATGCATTTCGACAAGAAGACTTCAGATTTCAACGAGGAGAACTACATGTCGTGCATTCTGGAAGACGACGGCCTTGAAATCCCCAGTCCTGCGTCTCTAAATCAGCAGGAGCAGGTCTCACAATTTGCCACACAGCAACAGATCCTTCtgcaccagcaacaacaacagcaacagtcGGCAACACTGCAACAGCATTCgccacagcaacagcagcagataTTCAACTGCGAGATTTGCAACTACTCATCATCCTACAAGGGCAATGTGATGCGCCACATGAAACTAGTTCACTCTCAACCCGGCACATCGCCTTCCATTTCTCCCGAGATGCTGATGGAAGAGGGTGAGCACACCACTCACAGTCTAAACGGAGACAATGGCAGCAGTCTTCCCGAAGGTTTCACCATCAAAACGGAACCATTGGAAGCAGTAGCCGCTACCAAGAACAATAACAACTCGACTCCGAGCCATCATCATCACCTGGAGACACTTGCACAGATCAAATTGGAACCAATGGAGCTCGCAGATGGCGTTAATCGAGCTCTACCTTCGCCTCTTTCAGCCCCACCACCACCGCTTAATTCAACCTCACCCCTGTCTGGCGATGAGAACTCGTTGCTGAGGAACTCTACTTCGATTGGGTCCAGCGGGCTGCCCTTCAATCAGAAGTACTGTCAGACTTGTGACATTAGCTTCAACTATATGAAGACCTACCTAGCGCACAAGCAGTTCTATTGCAAGAATAAAACTCGAACCGATACGGATAGTCCGAGTCCGGTGCCGCCAGTGCAATCGCCTACAATGTTGAACAAGAATAAGGAGAACTTGGAAGCGGCCATGTTATAG
Protein Sequence: MQKDAASMRALFMISLKTKDLSPSELNEQADAVSSADIDQSAEPRTPFTTESLMDENRPSSSTPRTLSPPSDPEVDDQHRSPSVRSDIQSATNSPSEHEDASIVPAAAVIAAIPKLRLNALLASDPALNPDARNLKILHEESTKNHHHEEGGVTPTPVVVDQKSAAKNQTSAVVVDNAQRVKVFMCLPCGIGFSSRSTLEAHQAYYCSHRKEVEEDPAGGGGGGGGGTSGDKNSTATSGEPSAKSIKTGKQYACTQCSYSADKKVSLNRHMRMHQSSPAPSSNASNGGDDSSSQQIDRYCSECDIRFSNVKTYRAHKQHYCSSRRNDGQTTPKLPEPSLKTSGGSVSPPQARTKTPTPAAVVAAAAAAAAAVTPQPFIALPTNPILIIPYYLIRAASMIPGPLTSVSSGIANPESTCFSLENGSLKPMATALSTSSITNNQIPHVEPTPRTHPPPARTPSNNDTATPLLTEKNARAASANSCSDSVKQSKKDGPRDFAPLDLSLRRSPIQRAQRVRSSSSFMQPADERIDIETMMEGKENLSIDSGSMTPEQIVCAPSLPNSPSMSPSPKRRTLSPRSSSAASMSPVPPSVMDHLPLRSILPADIAMKLTESNIIPPLIAKQNLELAFKLSSANSKQGDASKAAMSNPLLGLPGTPMNVGAASSGQPQIFVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEDTESKISTPPSASNSGVDTNPIAYQQLICAACGIKYTSLDNLRAHQKFYCPKGGGDAAAAPPVTKEKCAKCKTVHEIGQPCPPIAATAAQQSSYKCPVCDVISLTAAESRKHLETHSSVKAFRCSICRYKGNTLRGMRTHIRMHFDKKTSDFNEENYMSCILEDDGLEIPSPASLNQQEQVSQFATQQQILLHQQQQQQQSATLQQHSPQQQQQIFNCEICNYSSSYKGNVMRHMKLVHSQPGTSPSISPEMLMEEGEHTTHSLNGDNGSSLPEGFTIKTEPLEAVAATKNNNNSTPSHHHHLETLAQIKLEPMELADGVNRALPSPLSAPPPPLNSTSPLSGDENSLLRNSTSIGSSGLPFNQKYCQTCDISFNYMKTYLAHKQFYCKNKTRTDTDSPSPVPPVQSPTMLNKNKENLEAAML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01223805;
90% Identity: iTF_00316349;
80% Identity: -