Cpag005291.1
Basic Information
- Insect
- Cheilosia pagana
- Gene Symbol
- -
- Assembly
- GCA_936435595.1
- Location
- CAKZFE010000017.1:5180818-5182392[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00086 0.077 13.7 2.0 2 19 104 121 103 121 0.97 2 11 1.7e-05 0.0016 19.1 1.5 2 23 139 160 138 160 0.96 3 11 0.00046 0.041 14.6 1.4 1 23 175 197 175 197 0.98 4 11 0.31 28 5.7 8.4 1 23 203 226 203 226 0.92 5 11 0.00082 0.074 13.8 1.9 1 23 281 303 281 303 0.95 6 11 0.0004 0.036 14.8 0.9 1 23 310 332 310 332 0.98 7 11 0.00032 0.029 15.1 0.1 1 23 339 361 339 361 0.98 8 11 6.7e-08 6e-06 26.7 1.9 1 23 367 389 367 389 0.99 9 11 1.5e-05 0.0013 19.3 0.6 1 23 395 418 395 418 0.98 10 11 0.065 5.9 7.8 0.9 1 23 423 445 423 445 0.95 11 11 0.17 15 6.5 0.3 1 12 450 461 450 463 0.85
Sequence Information
- Coding Sequence
- ATGCCTTCCGTGCTATGCACTACCTGTGCTGAAGATCTTCATAAAGCCTATCTGTTTTTAAAGCGGGTAGAAAATGCTGAGACCATTTTAAAGCGGATAAAAGACCGAATCTATATAGAAagtCCAGCCATAAGAATTACACAAACTCAGGAAGAACAAGTTTGTTTGACGGATGAAACTACTCAAGTTGGACCGAATTCGGATACTATAATCAAACCGCAACTGGCTGCCGCtgttgttgaaaatgaaaatgtttcggATAGTGAAGCTGCACTTGATAATTCATCAATAGATCCAGACACTTGCTTGCAGTGTCAGGATTGTGGAAAGATTTGCTCATCGCGGGACTCGTATAAAAAACATTGTCTACCACATCAGCTtgcaagaaagaaaacaaaaacaagaaaacccATCAAGTGCAAACAATGCAACAAAACATTTAAGTTCTATGTGGATTTGGAAAAACATTTACTCTTACACGGTATGGCAAACATTCAGGTGGCTAAAGCTGGCAAGATTATTTACAAGTGCAACACGTGCGAAAAGTCTTATTATTCTGTCGTTGCATTCATTGATCACATGCACATCCACAATGGAACAAAACCGTATAAATGCAGCATATGTGGCGTATGCCGTCACACGAGATCAAAGCTCAAATCCCACAAATACCATACCCACGGAAAAGGGTTAGAACTTCGACTTGCAATCAAAGacgaaaaaatgaaattcaTGGAAACGGAACCGTTGCGTTTCAAAAGCAAATGTCGATACTGTGGGAAGCTGGTGGTCAATGAGGTAATCAAGCGACACGAGAAGATGCATGAGAATCCCGAGAAGCGCTTTCAGTGTTCCGTTTGCTCGAAAACATTTTACACAGAGCAAAACTTGAAATTTCATGCTGACACACATCTAGAGGTTCGCAAGCCGTTCAAGTGCACAATATGTGGTCAGGAGATCCTGCGGCAGTACTCGCTCAAACTGCATATGCAACGCCATGCCAGTGAggaaaaaaagttcaaatgtGATATTTGCGGCACGGTATTATCGGCCAAAGGATCACTAGCCGAGCATAGGGAAAAACACTTTGCCAACAGCAAATACAAGTGCGACGACTGCGATAAGACGTTTATCAGAAAATCACGACTGGTCTACCATATGCGTAGTCATACTGGCGAAAATCCATTTCAATGCAAACAGTGTGACAAGAGCTATAAGATGGCAGCTCGCCTCAAGAGCCACGTCAGGGTAGCACATGCAAATCAAACTTATGACTGCGACCAGTGTGAATCAAAATTCCGATCCTACGGCGGCTTTGTTAACCATAAGTTTGTGCACATTGGATATCCATTCAAATGTCCGCAGTGCGATAAAGGCACAGCCAATCGGGAAAGGTAG
- Protein Sequence
- MPSVLCTTCAEDLHKAYLFLKRVENAETILKRIKDRIYIESPAIRITQTQEEQVCLTDETTQVGPNSDTIIKPQLAAAVVENENVSDSEAALDNSSIDPDTCLQCQDCGKICSSRDSYKKHCLPHQLARKKTKTRKPIKCKQCNKTFKFYVDLEKHLLLHGMANIQVAKAGKIIYKCNTCEKSYYSVVAFIDHMHIHNGTKPYKCSICGVCRHTRSKLKSHKYHTHGKGLELRLAIKDEKMKFMETEPLRFKSKCRYCGKLVVNEVIKRHEKMHENPEKRFQCSVCSKTFYTEQNLKFHADTHLEVRKPFKCTICGQEILRQYSLKLHMQRHASEEKKFKCDICGTVLSAKGSLAEHREKHFANSKYKCDDCDKTFIRKSRLVYHMRSHTGENPFQCKQCDKSYKMAARLKSHVRVAHANQTYDCDQCESKFRSYGGFVNHKFVHIGYPFKCPQCDKGTANRER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315418;
- 90% Identity
- -
- 80% Identity
- -