Basic Information

Insect: Cheilosia pagana
Gene Symbol: -
Assembly: GCA_936435595.1
Location: CAKZFE010000002.1:6603654-6605651[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.43 39 5.2 0.8 2 23 84 106 83 106 0.92

2 10 8.8 7.9e+02 1.1 0.1 5 14 104 113 103 114 0.85

3 10 2.6e-05 0.0023 18.5 1.7 1 23 405 427 405 427 0.98

4 10 0.007 0.63 10.8 3.0 1 23 433 455 433 455 0.97

5 10 0.0037 0.33 11.7 0.4 1 23 461 483 461 483 0.98

6 10 2.8e-08 2.5e-06 27.8 0.3 1 23 489 511 489 511 0.98

7 10 5.5e-06 0.00049 20.6 0.4 1 23 517 539 517 539 0.99

8 10 0.0028 0.25 12.1 4.8 1 23 545 567 545 567 0.99

9 10 4.5e-05 0.0041 17.7 1.5 1 23 573 596 573 596 0.98

10 10 3.6e-06 0.00032 21.2 1.2 1 23 623 646 623 646 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.43	39	5.2	0.8	2	23	84	106	83	106	0.92
2	10	8.8	7.9e+02	1.1	0.1	5	14	104	113	103	114	0.85
3	10	2.6e-05	0.0023	18.5	1.7	1	23	405	427	405	427	0.98
4	10	0.007	0.63	10.8	3.0	1	23	433	455	433	455	0.97
5	10	0.0037	0.33	11.7	0.4	1	23	461	483	461	483	0.98
6	10	2.8e-08	2.5e-06	27.8	0.3	1	23	489	511	489	511	0.98
7	10	5.5e-06	0.00049	20.6	0.4	1	23	517	539	517	539	0.99
8	10	0.0028	0.25	12.1	4.8	1	23	545	567	545	567	0.99
9	10	4.5e-05	0.0041	17.7	1.5	1	23	573	596	573	596	0.98
10	10	3.6e-06	0.00032	21.2	1.2	1	23	623	646	623	646	0.96

Sequence Information

Coding Sequence: ATGATAAACACAGTGCTGGAGCATGTGCCCATAAAGTTGGAAACTCTCGACGATGATCGCTTCAGCGATGATTGTAGTGAAGCAGCTggaacatcatcatcatctacagcaacaacaacaaccgcagcCGGGCAAACAACTGCGGCCACCAGCAGTGCATCTTCAACATCGTCAAGGACAACGAATCTGGAAAATGAAATTGAGAGTTGTGGCAATGTCTTCATTTTGAATCGGCGCAAGTTGTTCCTGATTTGCGGTTACTGCGACAGTAAGTATGCAAATATGCTGCAATTCGCCAAGCATCTGAACGACTGCCATAAGATTTTCTACACAAACGATGGACATTCAAATGGAgcaggtggtggtggtgcggtGGCTGCTGCCGCTATTGCTGCGGTAGCATCAGAGCCTGAGAGTGATTCTGATGCGTCGTCAGCGGCATTGACTGCGGCATTAATAGTTAAGGGTGGCTTTGAGATTCGTTTTGTTAGGGAAGGTTCAGTGTGCGGCACAGACACACCGATATCTACGCCGCCGCCATCAGTGGAAGACACTCTGTTGAAACATGTTCCCATAAAGGAGGAGATAGAGGACGATGTCGACGACGACGTCACAATGATAGAGGACAGCTCGACAGTGATTTCGAATTTTGAGCACAACATCGAGAGCTGTGGCAACATATTCGTAATGAATCGACGAAAGCTATTCCTGATCTGCGGTTTCTGCGAAGGTAAATATGCAAATATGGAGTTGTTCGGCATGCACCTGCGTGAATGTCACACGATTTTTGACGATGAGCCGGAGGTTAGCAATATTTGCCTGAAAAAAGAAGTGGTTGTGAAGGAGGAGCCAGAGGAGGAAGTGCCGCTGCCTGTGAGTCGTTGTGACACAAACAACGAGAATGCCCCCCCAATGGTGGCGATCCCGAATGGCACAAGTGTGAACAACAAGGACATCATTCCCGAAGAAGAGTTGGTTAGTATTGTGGCATCTGCCGCTGCAGCAGCTGCTAAAAGGAAGAAAGTGCACCTTGACGATGAGGAGGTAGTTCCTCAGGAAGATGAAATCGCAACCCTGGACGAAGAGACTGCCGCCGAGCAGACAGTACTGAGAGAGACTCGCAATCAACGACGTCAAGCCAAAGGCACTTCCAGAAGGCCCACAAAAACATCGAAAGACTGCTTCAAAAAGGAGGACAGCCCAACAAGCATCTACCCTTGCAAGCAATGCTCGAAAACATTCACTAAGCTGTCCCGGCTGACGGAACACGTCCGCCTGCACACCGGCGAGAAACCCTTCAAATGCAACCAGTGCAGCAAATCATTCCGCATCAAGCTGCGCATGACTGAGCACCAGTTGCGCCATCGTTCCGTAAAGGCCTACGTATGTGACGTTTGTGGCTTGGGACTGGCAACTCGACAGGACTATTCCCTTCATCAGCGGCATCACAATGGCGACAAACGCTACAACTGTCCGGTGTGCAACAAAGCCTTTGTGCGCAGCAGTGATCTCAAGACTCATCTTCGCATCCATTCCGACGAACGGCCGTTTAAGTGCGAAATCTGCAATCTCTCCTTCCGTGCAAATCAGAACCTCATCATTCATCGGCGGGTGCACCAGGGCGACAAGCAATTCCAGTGCGACTACTGTGACAAGCGGTTCCTACGCAAGATCGACAAACGAGTGCATCATCGCACTCACACCGGCGAGAAGGCGTTCAAATGTGAAATCTGCGGACGAGGATACTCGGCGAAGGTGCATGTTCGAAGGCACATTCAAAAGCGCCATGTCGATCATGTCCTTGCCGAGGAGGACGGTGTTAAACTCACAAAGGAAACTAAACCAACCAAGAAAGCCGTCAAGTCGTTCAAGTGTTCGTCCTGCCCGAAGTCGTACTCCTCCAAGGTCAATCTGCAGAAGCACGTCCAACAGATCCACGTTAAGCTTAGTACAGAGGAGCCATTGCCGTCACCTCAGACAGAAGTTGCCATCAAATAA
Protein Sequence: MINTVLEHVPIKLETLDDDRFSDDCSEAAGTSSSSTATTTTAAGQTTAATSSASSTSSRTTNLENEIESCGNVFILNRRKLFLICGYCDSKYANMLQFAKHLNDCHKIFYTNDGHSNGAGGGGAVAAAAIAAVASEPESDSDASSAALTAALIVKGGFEIRFVREGSVCGTDTPISTPPPSVEDTLLKHVPIKEEIEDDVDDDVTMIEDSSTVISNFEHNIESCGNIFVMNRRKLFLICGFCEGKYANMELFGMHLRECHTIFDDEPEVSNICLKKEVVVKEEPEEEVPLPVSRCDTNNENAPPMVAIPNGTSVNNKDIIPEEELVSIVASAAAAAAKRKKVHLDDEEVVPQEDEIATLDEETAAEQTVLRETRNQRRQAKGTSRRPTKTSKDCFKKEDSPTSIYPCKQCSKTFTKLSRLTEHVRLHTGEKPFKCNQCSKSFRIKLRMTEHQLRHRSVKAYVCDVCGLGLATRQDYSLHQRHHNGDKRYNCPVCNKAFVRSSDLKTHLRIHSDERPFKCEICNLSFRANQNLIIHRRVHQGDKQFQCDYCDKRFLRKIDKRVHHRTHTGEKAFKCEICGRGYSAKVHVRRHIQKRHVDHVLAEEDGVKLTKETKPTKKAVKSFKCSSCPKSYSSKVNLQKHVQQIHVKLSTEEPLPSPQTEVAIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00314608;
90% Identity: iTF_00311293;
80% Identity: -